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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-16 19:20:17, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 4.
LR877191.1:110262810-110262827
AACTTGGCCCTGTGTATTGCTAGACATGAG110262810TTCTGTGCTAGGTCTGCCTAGCACTTTCATTGAGGAAATGGATGAATT
Heterocephalus glaber genome assembly, chromosome: 21.
OX090961.1:42150160-42150177
GGCCCACACCCAGGGGCACAGCCCAAGGGG42150160TTCTGTGCTAGGTCTGCCACCCGCCCTCACCTCCACAGCTTGCTGTGG
Onychomys arenicola genome assembly, chromosome: 4.
OX460350.1:110716713-110716730
AACTTGGCCCTGTGTATTGCTAGACATGAG110716713TTCTGTGCTAGGTCTGCCTAGCACTTTCATTGAGGAAATGGATGAATT
Onychomys leucogaster genome assembly, chromosome: 4.
OX460374.1:110891208-110891225
AACTTTGCCCTGTGTATTGCTAGACATGAG110891208TTCTGTGCTAGGTCTGCCTAGCACTTTCATTGAGGAAATGGATGAATT
Onychomys leucogaster genome assembly, chromosome: 4.
OX460421.1:110731345-110731362
AACTTTGCCCTGTGTATTGCTAGACATGAG110731345TTCTGTGCTAGGTCTGCCTAGCACTTTCATTGAGGAAATGGATGAATT
Onychomys arenicola genome assembly, chromosome: 4.
OX460445.1:110988858-110988875
AACTTGGCCCTGTGTATTGCTAGACATGAG110988858TTCTGTGCTAGGTCTGCCTAGCACTTTCATTGAGGAAATGGATGAATT
Onychomys torridus genome assembly, chromosome: 4.
OX460885.1:110262810-110262827
AACTTGGCCCTGTGTATTGCTAGACATGAG110262810TTCTGTGCTAGGTCTGCCTAGCACTTTCATTGAGGAAATGGATGAATT
Heterocephalus glaber genome assembly, chromosome: 17.
OZ001125.1:56092640-56092657
GGCCCACACCCAGGGGCACAGCCCAAGGGG56092640TTCTGTGCTAGGTCTGCCACCCGCCCTCACCTCCACAGCTTGCTGTGG
Heterocephalus glaber genome assembly, chromosome: 22.
OZ179221.1:56092640-56092657
GGCCCACACCCAGGGGCACAGCCCAAGGGG56092640TTCTGTGCTAGGTCTGCCACCCGCCCTCACCTCCACAGCTTGCTGTGG
Acomys minous genome assembly, chromosome: 15.
OZ186489.1:7224807-7224824
GTGTAAGTCCGCAGGCTTTCTGTGCGTCAT7224807TTCTGTGCTAGGTCTGCCTCGAGACCGGTCATGCCTGGACTGCGGTCG
Canis lupus familiaris breed Labrador retriever chromosome 03b.
CP050627.1:40810471-40810488
CCAAAACTCAGTGAATAACTCTCCACCCAC40810471TTCTGTGCTAGGTCTGCCCCATTTTGCCTGAATTAGAAATGCTGCTCT
Canis lupus genome assembly, chromosome: 3.
HG994384.1:32908470-32908487
CCAAAACTCAGTGAATAACTCTCCACCCAC32908470TTCTGTGCTAGGTCTGCCCCATTTTGCCTGAATTAGAAATGCTGCTCT
Sequence 355 from Patent WO2012088289.
JA818018.1:1-18
1TTCTGTGCTAGGTCTGCC
Sequence 355 from patent US 9702013.
KH919545.1:1-18
1TTCTGTGCTAGGTCTGCC
Sequence 355 from patent US 10590490.
MO959822.1:1-18
1TTCTGTGCTAGGTCTGCC
BONHE10TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHE10, genomic survey sequence.
BZ455173.1:872-889
TCAATAAATGCTTCATCTTCAAAATACCGA872TTCTGTGCTAGGTCTGCCAAAACAGAATCCCAAAAGCTAGCGGTAAGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001J13, complete sequence.
AC189186.2:60007-60024
TCAATAAATGCTTCATCTTCAAAATAACGA60007TTCTGTGCTAGGTCTGCCAAAACAGAATCCAAAAGCTAAGTGCTAAGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB067F22, complete sequence.
AC189430.2:54410-54427
TCAATAAATGCTTCATCTTCAAAATAACGA54410TTCTGTGCTAGGTCTGCCAAAACAGAATCCAAAAGCTAAGTGCTAAGT
Gossypioides kirkii chromosome KI_07.
CP032249.1:20459584-20459601
TGTCTTTTCTGGTTGTATACTTCCTCCATT20459584TTCTGTGCTAGGTCTGCCAATACGACGAATGGCCGAATTTCTAAACCA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:6042042-6042059
TCAATAAATGCTTCATCTTCAAAATAACGA6042042TTCTGTGCTAGGTCTGCCAAAACAGAATCCAAAAGCTAAGTGCTAAGT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:10825545-10825562
TCAATAAATGCTTCATCTTCAAAATACCGA10825545TTCTGTGCTAGGTCTGCCAAAACAGAATCCAAAAGCTAAGCGGTAAGT
Heterocladium heteropterum genome assembly, chromosome: 9.
OZ208706.1:17647600-17647617
AATGTTTCTAGAACGTCTCTAGAACCTTTC17647600TTCTGTGCTAGGTCTGCCCAAATATTAAACCAGCGGCATTGACGTTAT
Egira conspicillaris genome assembly, chromosome: 10.
OZ218550.1:13134009-13134026
CCCCACTTAGGTATCAAGCTAAGGTGTGTG13134009TTCTGTGCTAGGTCTGCCTACCTAGCACAGAAATATTGATCTTGATGT
Rhinatrema bivittatum genome assembly, chromosome: 12.
LR584398.1:78748219-78748236
TCCTTGTTCTGTTTCAGGTCCTTGGTGGTC78748219TTCTGTGCTAGGTCTGCCTTTGCTGGATTGAGAATTCAGGTTCCTCTT
Vipera ursinii genome assembly, chromosome: 15.
OX365980.1:634803-634820
ACAAGGAGGCTTTGCTTTGTCCACGTTTTA634803TTCTGTGCTAGGTCTGCCGTTGTGGGGTGTAAAGGTCTCCAGGGAAGA
Nannobrachium achirus genome assembly, chromosome: 15.
OY997652.1:34138933-34138950
ATGTTTAACTTTTTGTCAAAATGAACATAG34138933TTCTGTGCTAGGTCTGCCAGTATTTCCCTCTACACCAAAATCTCTTAA
Lissotriton helveticus genome assembly, chromosome: 1_1.
OZ180042.1:909706957-909706974
CTACATCTAGAAATGAACCTCAATAGGGTG909706957TTCTGTGCTAGGTCTGCCTCGTTCTGAAAAGATCCCATATGAACAAAT
Acomys kempi genome assembly, chromosome: 11.
OU015365.1:48924655-48924672
CGATCGCAGTCCAGGCATGACCGGTCTCGA48924655GGCAGACCTAGCACAGAAATGACGCACAGAAAGCCTGCGGACTTACAC
Acomys dimidiatus genome assembly, chromosome: 12.
OU015385.1:56671520-56671537
CAATCGCAGTCCAGGCATGACCGGTCTCGA56671520GGCAGACCTAGCACAGAAATGACGCACAGAAAGCCTGCGGACTTACAC
Heterocephalus glaber genome assembly, chromosome: 21.
OX090929.1:53823307-53823324
CCACAGCAAGCTGTGGAGGTGAGGGCGGGT53823307GGCAGACCTAGCACAGAACCCCTTGGGCTGTGCCCCTGGGTGTGGGCC
Heterocephalus glaber genome assembly, chromosome: 17.
OZ001082.1:54303435-54303452
CCACAGCAAGCTGTGGAGGTGAGGGCGGGT54303435GGCAGACCTAGCACAGAACCCCTTGGGCTGTGCCCCTGGGTGTGGGCC
Heterocephalus glaber genome assembly, chromosome: 22.
OZ179190.1:54303435-54303452
CCACAGCAAGCTGTGGAGGTGAGGGCGGGT54303435GGCAGACCTAGCACAGAACCCCTTGGGCTGTGCCCCTGGGTGTGGGCC
Sequence 115 from Patent WO2012088289.
JA817778.1:234-251
ACTTACCACTTAGCTTTTNGATTCTGTTTT234GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
Sequence 115 from patent US 9702013.
KH919305.1:234-251
ACTTACCACTTAGCTTTTNGATTCTGTTTT234GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
Sequence 115 from patent US 10590490.
MO959582.1:234-251
ACTTACCACTTAGCTTTTNGATTCTGTTTT234GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
BONHE10TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHE10, genomic survey sequence.
BZ455179.1:659-676
ACTTACCGCTTAGCTTTTGGATTCTGTTTT659GGCAGACCTAGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGA
KBrB001J13F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB001J13, genomic survey sequence.
DX011112.1:205-222
ACTTAGCACTTAGCTTTTGGATTCTGTTTT205GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
Brassica napus cultivar Xiang5A chromosome 10.
CP151905.1:20672850-20672867
ACTTAGCACTTAGCTTTTGGATTCTGTTTT20672850GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:57725665-57725682
ACTTACCGCTTAGCTTTTGGATTCTGTTTT57725665GGCAGACCTAGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:14733452-14733469
ACTTACCACTTAGCTTTTGGATTCTGTTTT14733452GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:54587190-54587207
ACTTACCGCTTAGCTTTTGGATTCTGTTTT54587190GGCAGACCTAGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGA
Brassica rapa genome, scaffold: A10.
LR031577.1:11678506-11678523
ACTTAGCACTTAGCTTTTGGATTCTGTTTT11678506GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:52726402-52726419
ACTTACCGCTTAGCTTTTGGATTCTGTTTT52726402GGCAGACCTAGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:14434544-14434561
ACTTAGCACTTAGCTTTTGGATTCTGTTTT14434544GGCAGACCTAGCACAGAATCGTTATTTTGAAGATGAAGCATTTATTGA
Rhytidiadelphus loreus genome assembly, chromosome: 4.
OX344764.1:50617713-50617730
ATAATGTCAATGCCGCTGGTTTGATATTTG50617713GGCAGACCTAGCACAGAAGAAAGGTTCTAGAGACGTTCTAGAAACATT
Pseudoscleropodium purum genome assembly, chromosome: 8.
OZ017802.1:4530303-4530320
ATAATGTCAATGCCGCTGGTTTAAGATTTG4530303GGCAGACCTAGCACAGAAGAAAGGTTCTAGAGGCATTCTAGAAACATT
Rhynchostegium megapolitanum genome assembly, chromosome: 6.
OZ207756.1:6194358-6194375
ATAATGTCAATGCCGCTGATTTAATATTTG6194358GGCAGACCTAGCACAGAAGAAAGGTTCTAGAGACATTCTAGAAACATT
Isopterygiella pulchella genome assembly, chromosome: 15.
OZ210570.1:4996458-4996475
ATAATGTCAATGGCGCTGGTTTAATATTTG4996458GGCAGACCTAGCACAGAAGAAAGGTTCTAGAGACGTTCTAGAAACATT
Isopterygiella pulchella genome assembly, chromosome: 22.
OZ210577.1:4155645-4155662
TAATGTCAATGGCGCTGGTTTAAATATTTG4155645GGCAGACCTAGCACAGAAGAAAGGTTCTAGAGACGTTCTAGAAACATT
Eucryptorrhynchus scrobiculatus isolate Escr-NXLW2018 chromosome 10.
CP061790.1:17660049-17660066
CGAGATGCCTTTAGAAAGGAGGAATTTACT17660049GGCAGACCTAGCACAGAACTAACCAATATTTTGGAGGGCTACGGTAAG
Rhinatrema bivittatum genome assembly, chromosome: 4.
LR584390.1:129817274-129817291
AAGAAGACTCTGAAGACTCAATCCAGTGAA129817274GGCAGACCTAGCACAGAAAACCACCAAGGACCTGGAACAAAACAAAGA
Vipera berus genome assembly, chromosome: 16.
OZ077574.1:9779983-9780000
TCTTCCCTGGAGACCTTTACACCCCACAAC9779983GGCAGACCTAGCACAGAATAAAACGTGGACAAAGCAAAGCCTCCTTGT
Lissotriton vulgaris genome assembly, chromosome: 1_1.
OZ183349.1:1754397387-1754397404
ATTTGTTCATATGGGATCTTTTCAGAACGA1754397387GGCAGACCTAGCACAGAACACCCTATTCAGGTTCATTCCTAGATGTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCTGTGCTAGGTCTGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTGTGCTAGGTCTGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.467 | 0.458 | search_plus_done; http://172.18.8.135:50800/match?q=TTCTGTGCTAGGTCTGCC&k=0&no_gap=0&offset=0&limit=50
0.800 | 0.332 | search_minus_done; http://172.18.8.135:50800/match?q=GGCAGACCTAGCACAGAA&k=0&no_gap=0&offset=0&limit=23
0.817 | 0.017 | cgi_end;

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