GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:32:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:13832482-13832501
TTTACCTTAACTTCTGATGGAATTGGATGC13832482TTCTTACTCCGCAGATGCTGATGAGAAGTTCAGGTATGAGATTAAAGATA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:13832482-13832501
TTTACCTTAACTTCTGATGGAATTGGATGC13832482TTCTTACTCCGCAGATGCTGATGAGAAGTTCAGGTATGAGATTAAAGATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB024J16, complete sequence.
AC189275.2:23106-23125
TATCCTTAATCTCATACCTAAACTTCTCAT23106CAGCATCTGCGGAGTAAGAAGCATCCAATTCCATCATAAGCCAAGTAAAA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:35091710-35091729
TATCCTTAATCTCATACCTAAACTTCTCAT35091710CAGCATCTGCGGAGTAAGAAGCATCCAAATTCATCAGAAGCCAAGTAAAA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:29560866-29560885
TATCCTTAATCTCATACCTAAACTTCTCAT29560866CAGCATCTGCGGAGTAAGAAGCATCCAAATTCATCAGAAGCCAAGTAAAA
Brassica rapa genome, scaffold: A02.
LR031573.1:27825058-27825077
TATCCTTAATCTCATACCTAAACTTCTCAT27825058CAGCATCTGCGGAGTAAGAAGCATCCAATTTCATCAGAAGCCAAGTAAAA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:57467301-57467320
TATCCTTAATCTCATACCTAAACTTCTCAT57467301CAGCATCTGCGGAGTAAGAAGCATCCAAATTCATCAGAAGCCAAGTAAAA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:28756272-28756291
TATCCTTAATCTCATACCTAAACTTCTCAT28756272CAGCATCTGCGGAGTAAGAAGCATCCAATTTCATCAGAAGCCAAGTAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTACTCCGCAGATGCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTACTCCGCAGATGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTACTCCGCAGATGCTG&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCATCTGCGGAGTAAGAA&k=0&no_gap=0&offset=0&limit=48
0.145 | 0.004 | cgi_end;

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