GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:03:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Electrona antarctica genome assembly, chromosome: 5.
OX578250.1:48499957-48499976
ACATCTAGATCGCGAACGTGGCGACGGAGG48499957TTCTTCATCCAGATCGTCCAGTCCCCGTCCTCCAAGGGTGTCCCTGCCCT
uncultured Sporobacter sp. isolate 4d2516f4-efcc-45fb-bf2e-ef986a56fd4c genome assembly, chromosome: 1.
OY762984.1:4501945-4501964
GGGATCAGTAACTTTATAATAGACGGCACG4501945TTCTTCATCCAGATCGTCCAGCTTTGCCTGCAGGACGATAGAATTGGCTT
uncultured Sporobacter sp. isolate 345903d0-cd28-47e6-9f6f-9f74e2cead0e genome assembly, chromosome: 1.
OY776214.1:4260070-4260089
GGGATCAGTAACTTTATAATAGACGGCACG4260070TTCTTCATCCAGATCGTCCAGCTTTGCCTGCAGGACGATAGAATTGGCTT
Trifolium pratense cDNA clone:RCE01717.
BB903863.1:238-257
TTCGCCGGTATTATTCCTCAAACGCTCTTC238TTCTTCATCCAGATCGTCCACGCTGGACGATTTAGAAGAAGAAGAAGAAG
Trifolium pratense cDNA clone:RCE01729.
BB903874.1:261-280
TTCGCCGGTATTATTCCTCAAACGCTCTTC261TTCTTCATCCAGATCGTCCACGCTGGACGATTTAGAAGAAGAAGAAGAAG
Trifolium pratense DNA, clone:RCG03039.
DE214536.1:9-28
CGCTCTTC9TTCTTCATCCAGATCGTCCACGCTGGACGATTTAGAAGAAGAAGAAGAAG
Trifolium pratense DNA, clone:RCG03774.
DE215144.1:9-28
CGCTCTTC9TTCTTCATCCAGATCGTCCACGCTGGACGATTTAGAAGAAGAAGAAGAAG
Tuwongella immobilis MBLW1 whole genome assembly and annotation.
LR586016.1:1917659-1917678
GCCTCGGCGTTCGAGCCGTTCGCGGACGAG1917659TTCTTCATCCAGATCGTCCAACGACACTTTGAGCGGCCAGCGGGGATCGA
Tuwongella immobilis isolate MBLW1 genome assembly, chromosome: 1.
LR593887.1:1917659-1917678
GCCTCGGCGTTCGAGCCGTTCGCGGACGAG1917659TTCTTCATCCAGATCGTCCAACGACACTTTGAGCGGCCAGCGGGGATCGA
Sepia lycidas genome assembly, chromosome: 28.
OZ010598.1:85155454-85155473
AGGTGATTGTGGCATTGATATTCAAGTATT85155454TTCTTCATCCAGATCGTCCAGCACTCATTGCTATAAAAGAAGACAGATTC
KR 1020210068484-A/1287: MICROBIOTA COMPOSITION, AS A MARKER OF RESPONSIVENESS TO ANTI-PD1/PD-L1/PD-L2 ANTIBODIES IN RENAL CELL CANCER.
OF285678.1:950-969
TGGTTGGCCGTCTGCCGGTCATCACCACAC950TGGACGATCTGGATGAAGAAGCCCTGATCCGAATCCTGACTGAGCCGAAA
Trifolium pratense DNA, clone:RCG02552.
DE214144.1:189-208
CTTCTTCTTCTTCTTCTAAATCGTCCAGCG189TGGACGATCTGGATGAAGAAGAAGAGCG
Trifolium pratense DNA, clone:RCG03362.
DE214800.1:189-208
CTTCTTCTTCTTCTTCTAAATCGTCCAGCG189TGGACGATCTGGATGAAGAAGAAGAGCG
Trifolium pratense DNA, clone:RCG04455.
DE215705.1:189-208
CTTCTTCTTCTTCTTCTAAATCGTCCAGCG189TGGACGATCTGGATGAAGAAGAAGAGCG
Trifolium pratense DNA, clone:RCG01076.
DE246720.1:195-214
CTTNCNNTTCTTCTTAAATCNGTCCAAGCG195TGGACGATCTGGATGAAGAAGAAGAGCG
Sepia lycidas genome assembly, chromosome: 28.
OZ010598.1:86585267-86585286
GAATCTGTCTTCTTTTATAGCAATGAGTGC86585267TGGACGATCTGGATGAAGAAAAGACTTGAATATCAATGCCACAATCACCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCTTCATCCAGATCGTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTCATCCAGATCGTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.249 | 0.241 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTCATCCAGATCGTCCA&k=0&no_gap=0&offset=0&limit=50
0.504 | 0.254 | search_minus_done; http://172.18.8.135:50400/match?q=TGGACGATCTGGATGAAGAA&k=0&no_gap=0&offset=0&limit=40
0.508 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).