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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:49:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Medicago truncatula EST, clone MtNF07C18N1.
AJ845567.1:202-222
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC202TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGGACCATC
NF102F04ST1F1042 Developing stem Medicago truncatula cDNA clone NF102F04ST 5', mRNA sequence.
AW696117.2:550-570
CTCCAAGGAGTTCTTTGCCCTCAAACCTTC550TTCTTGTGCTCCTCATCTTCACTCTTGTAATTTCTCTGCTTTCTTGGACCA
EST333500 KV3 Medicago truncatula cDNA clone pKV3-22E18, mRNA sequence.
AW774349.1:504-524
TTCTCCAAAGAGTTCTTTGCCATAACCTTC504TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGGACCATC
Trifolium pratense cDNA clone:RCE33546.
BB924806.1:181-201
TTCTCCAATGAGTTCTTTGCCTCAACCTTC181TTCTTGTGCTCCTCATCTTCACTCTTATATTTCTCTGCTTCTTGAACCATC
UCRCS01_03bf10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03bf10, mRNA sequence.
CB291750.1:531-551
TTTTCCAAGGGATTCTTGGCCTCGACCTTC531TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
UCRCS05_0001O07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O07, mRNA sequence.
CN185802.1:517-537
TTTTCCAAGGCATTCTTGGCCTCGACCTTC517TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
UCRCS06_0004P18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0004P18, mRNA sequence.
CN191329.1:527-547
TTTTCCAAGGCATTCTTGGCCTCGACCTTC527TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
UCRCS06_0006I03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I03, mRNA sequence.
CN192193.1:485-505
TTTTCCAAGGCATTCTTGGCCTCGACCTTC485TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
UCRCS07_21C02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-21C02-F3-1-4.g, mRNA sequence.
CX045181.1:519-539
TTTTCCAAGGCATTCTTGGCCTCGACCTTC519TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
UCRCS09_46D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-46D06-H11-1-7.b, mRNA sequence.
CX052507.1:506-526
TTTTCCAAGGCATTCTTGGCCTCGACCTTC506TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
UCRCS08_53A12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-53A12-A23-1-5.g, mRNA sequence.
CX076923.1:522-542
TTTTCCAAGGCATTCTTGGCCTCGACCTTC522TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
C16015B09SK ExocortL1 Citrus medica cDNA clone C16015B09, mRNA sequence.
CX304739.1:531-551
TTTTCCAAGGGATTCTTGGCCTCGACCTTC531TTCTTGTGCTCCTCATCTTCAGACTTGGACTTCTCGGCCTCTTGAACCATC
s13dNF40A08AT065_514722 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence.
CX527105.1:486-506
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC486TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGGACCATC
s13dNF60H09MJ076_271031 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX532369.1:481-501
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC481TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGGACCATC
UCRCS11_06P21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P21, mRNA sequence.
DN621641.1:531-551
TTTTCCAAGGCATTCTTGGCCTCGACCTTC531TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
UCRCA01_01O07_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0001O07, mRNA sequence.
DN622279.1:507-527
TTTTCCAAGGCATTCTTGGCCTCGACCTTC507TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
EST1129364 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1PJ76, mRNA sequence.
DR937825.1:471-491
TTCTCCAAGGCATTCTTTGCCTCAACCTTT471TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCTGCTTCCTGAACCATT
OB_MEa0002D06.f OB_MEa Ocimum basilicum cDNA clone OB_MEa0002D06 5', mRNA sequence.
DY327967.1:460-480
TTCTCCAATGCATTCTTGGCCTCCACCTTC460TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCGGCTTCCTGAACCATC
OB_MEa0006N15.r OB_MEa Ocimum basilicum cDNA clone OB_MEa0006N15 3', mRNA sequence.
DY331397.1:497-517
TTCTCCAATGCATTCTTGGCCTCCACCTTC497TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCGGCTTCCTGAACCATC
OB_SEa03B06.r OB_SEa Ocimum basilicum cDNA clone OB_SEa03B06 3', mRNA sequence.
DY335839.1:484-504
TTCTCCAATGCATTCTTGGCCTCCACCTTC484TTCTTGTGCTCCTCATCTTCAGACTTGTATTTCTCGGCTTCCTGAACCATC
Zfi02b_50_E11_C017.g1 cDNA library derived from female gametophytes Zamia vazquezii cDNA clone 122Nkh_I21 5', mRNA sequence.
FD768404.1:393-413
TTTTCCAACGAATTCTTAGACTCGACCTTC393TTCTTGTGCTCCTCATCTTCAGACTTGTATTTTTCGGCATCCTGGACCATC
Zfi03b_18_D04_C018.g1 Second Zamia male gametophyte library Zamia vazquezii cDNA clone 122OoG_G07 5', mRNA sequence.
FD775113.1:495-515
TTTTCCAACGAATTCTTAGACTCGACCTTC495TTCTTGTGCTCCTCATCTTCAGACTTGTATTTTTCGGCATCCTGGACCATC
Raphanus sativus mRNA, clone: RSCR19M08, 5' end sequence.
FY445814.1:519-539
TTTTCAAGAGCATTCTTGGCCTCCACCTTC519TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCTTGCACCATC
Trifolium repens mRNA, clone: WCC08i15_037, unspecified EST.
FY456955.1:429-449
TTCTCCAAGGAGTTCTTTGCTTCAACCTTT429TTCTTGTGCTCCTCATCTTCACTCTTGTACTTCTCTGCTTCTTGAACCATC
Trifolium repens mRNA, clone: WCC27j18_086, unspecified EST.
FY463659.1:536-556
TTCTCCAATGAGTTCTTTGCTTCAACCTTC536TTCTTGTGCTCCTCATCTTCACTCTTGTACTTCTCTGCTTCTTGAACCATC
MEUAT25TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence.
GE350775.1:529-549
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC529TTCTTGTGCTCCTCATCTTCACTCTTGG
CCXA1120.g1 CCXA Euonymus alatus seed tissues collected from 8/14 to 9/19/2007 normalized Euonymus alatus cDNA clone CCXA1120 3', mRNA sequence.
HS003986.1:510-530
TTTTCCAAGGTATTCTTAGACTCCACCTTC510TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCAGCCTCCTGCACCATC
CCXA6092.g1 CCXA Euonymus alatus seed tissues collected from 8/14 to 9/19/2007 normalized Euonymus alatus cDNA clone CCXA6092 3', mRNA sequence.
HS013403.1:464-484
TTTTCCAAGGTATTCTTAGACTCCACCTTC464TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCAGCCTCCTGTACCATC
CCXA10281.g1 CCXA Euonymus alatus seed tissues collected from 8/14 to 9/19/2007 normalized Euonymus alatus cDNA clone CCXA10281 3', mRNA sequence.
HS019580.1:467-487
TTTTCCAAGGTATTCTTAGACTCCACCTTC467TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCAGCCTCCTGTACCATC
CCXA1120.g1 CCXA Euonymus alatus seed tissues collected from 8/14 to 9/19/2007 normalized Euonymus alatus cDNA clone CCXA1120 3', mRNA sequence.
HS249208.1:510-530
TTTTCCAAGGTATTCTTAGACTCCACCTTC510TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCAGCCTCCTGCACCATC
CCXA6092.g1 CCXA Euonymus alatus seed tissues collected from 8/14 to 9/19/2007 normalized Euonymus alatus cDNA clone CCXA6092 3', mRNA sequence.
HS258625.1:464-484
TTTTCCAAGGTATTCTTAGACTCCACCTTC464TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCAGCCTCCTGTACCATC
CCXA10281.g1 CCXA Euonymus alatus seed tissues collected from 8/14 to 9/19/2007 normalized Euonymus alatus cDNA clone CCXA10281 3', mRNA sequence.
HS264802.1:467-487
TTTTCCAAGGTATTCTTAGACTCCACCTTC467TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCAGCCTCCTGTACCATC
Ko2101 Subtracted cDNA library of Kandelia obovata under low temperature Kandelia obovata cDNA, mRNA sequence.
JZ585734.1:229-249
TTCTCTAAAGCATTCTTGGCTTCAACCTTT229TTCTTGTGCTCCTCATCTTCAGCCTTATACTTCTCAGCCTCCTGCACCATC
TSA: Cajanus cajan cultivar UPAS 120 contig23954.UPAS mRNA sequence.
EZ641671.1:484-504
TTCTCTAAGGCATTCTTCGCCTCAACCTTC484TTCTTGTGCTCCTCATCTTCAGACTTGTATTTCTCAGCTTCTTGAACCATC
TSA: Cajanus cajan cultivar Asha contig31274.Asha mRNA sequence.
EZ679138.1:596-616
TTCTCTAAGGCATTCTTCGCCTCAACCTTC596TTCTTGTGCTCCTCATCTTCAGACTTGTATTTCTCAGCTTCTTGAACCATC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1750.
FX657605.1:668-688
TTCTCAAGAGCATTCTTGGCCTCCACCTTC668TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCTTGGACCATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1799.
FX752945.1:665-685
TTCTCAAGAGCATTCTTGGCCTCCACCTTC665TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCTTGGACCATC
TSA: Medicago sativa cultivar Chilean F0D_167 mRNA sequence.
JL866622.1:579-599
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC579TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGAACCATC
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_359 mRNA sequence.
JL881563.1:581-601
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC581TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGAACCATC
TSA: Pachycladon cheesemanii 46603_504_4172_5_41.Pachleaf mRNA sequence.
JP979904.1:315-335
TTCTCAAGAGCATTCTTGGCTTCGACCTTC315TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCCGCCTCTTGAACCATT
TSA: Pachycladon fastigiatum 39625_507_20131_7_41.Pafaleaf mRNA sequence.
JR012957.1:318-338
TTCTCAAGAGCATTCTTGGCTTCGACCTTC318TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCCGCCTCTTGAACCATC
TSA: Allium sativum Unigene118330_All.Ascvb, mRNA sequence.
JV243220.1:131-151
TTCTCCAACGTATTCTTAGCCTCCACCTTC131TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCTTCCTGAACCATC
TP_MBa0026G23.r TP_MBa Trifolium pratense genomic clone TP_MBa0026G23 3', genomic survey sequence.
HR283761.1:79-99
TTCTCCAATGAGTTCTTTGCCTCAACCTTC79TTCTTGTGCTCCTCATCTTCACTCTTATATTTCTCTGCTTCTTGAACCATC
Medicago truncatula clone mth2-16n21, complete sequence.
AC146757.19:118660-118680
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC118660TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGGACCATC
Medicago truncatula clone mth2-9l3, complete sequence.
AC147536.13:94228-94248
TTCTCCAAGGAGTTCTTTGCCTCAACCTTC94228TTCTTGTGCTCCTCATCTTCACTCTTGTATTTCTCTGCTTCTTGGACCATC
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:106455966-106455986
TTTTCCAAGGCATTCTTTGCATCAACCTTC106455966TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCTGCCTCCTGCACCATC
Eustoma grandiflorum DNA, chromosome 9, draft genome sequence.
AP025048.1:38472426-38472446
TTCTCAAGCGCATTCTTGGCATCAACCTTC38472426TTCTTGTGCTCCTCATCTTCAGATTTGTATTTCTCAGCTTCCTGCACCATT
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:4099490-4099510
TTCTCCAATGAGTTCTTTGCTTCAACCTTC4099490TTCTTGTGCTCCTCATCTTCACTCTTGTACTTCTCTGCTTCTTGAACCATC
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:4748763-4748783
TTCTCCAAGGAGTTCTTTGCTTCAACCTTT4748763TTCTTGTGCTCCTCATCTTCACTCTTGTACTTCTCTGCTTCTTGAACCATC
Glycine max cultivar Williams 82 chromosome 18.
CP126443.1:59637794-59637814
TTCTCCAAGGCATTCTTTCCCTCAACCTTC59637794TTCTTGTGCTCCTCATCTTCAGACTTGTATTTCTCAGCTTCTTGAACCATC
Rhododendron vialii isolate Sample 1 chromosome 13b.
CP127064.1:9555759-9555779
TTCTCCAATGCAATCTTTGCCCCCACTTTC9555759TTCTTGTGCTCCTCATCTTCAAATTTGTACTTCTCGGCCTCCTGTACCATT
Rhododendron vialii isolate Sample 1 chromosome 13a.
CP127077.1:9374355-9374375
TTCTCCAACGCAATCTTTGCCCCCACTTTC9374355TTCTTGTGCTCCTCATCTTCAAATTTGTACTTCTCGGCCTCCTGCACCATT
Warburgia ugandensis isolate CL-2023a chromosome 2.
CP141127.1:92052803-92052823
TTCTCAAGGGCATTCTTAGACTCCACCTTC92052803TTCTTGTGCTCCTCATCTTCAGACTTGTATTTCTCGGCTTCCTGAACCATA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:19111154-19111174
TTCTCAAGAGCATTCTTGGCCTCCACCTTC19111154TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCTTGGACCATC
Impatiens glandulifera genome assembly, chromosome: 3.
OU015483.1:14770106-14770126
TTCTCCAATGCATTCTTGGCCTCAACCTTC14770106TTCTTGTGCTCCTCATCTTCAGACTTGTATTTCTCAGCCTCCTGAACCATC
Mercurialis annua genome assembly, chromosome: LG8.
OW569318.1:38829716-38829736
TTCTCAAGAGCATTCTTGGCTTCAACCTTC38829716TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCTTGTACCATC
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:5327031-5327051
TTCTCCAAGGAGTTCTTTGCTTCAACCTTT5327031TTCTTGTGCTCCTCATCTTCACTCTTGTACTTCTCTGCTTCTTGAACCATC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:19111154-19111174
TTCTCAAGAGCATTCTTGGCCTCCACCTTC19111154TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCTTGGACCATC
Cardamine flexuosa genome assembly, chromosome: 3.
OY743216.1:568353-568373
TTCTCAAGAGCGTTCTTGGCCTCGACCTTC568353TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCTTCTTGGACCATC
Cochlearia excelsa genome assembly, chromosome: 2.
OY748328.1:33070923-33070943
TTCTCAAGAGCGTTCTTGGCCTCCACCTTC33070923TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCCGCCTCTTGAACCATC
Citrus sinensis genome assembly, chromosome: 8.
OY754325.1:26162647-26162667
TTTTCCAAGGCATTCTTGGCCTCGACCTTC26162647TTCTTGTGCTCCTCATCTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATC
Geranium rotundifolium genome assembly, chromosome: 3.
OY987313.1:6579426-6579446
GCAGAGACCCATGTTGATTTGATGTTTCTT6579426TTCTTGTGCTCCTCATCTTCATAGCTTTATATAAATAATTACTCTTCATGA
Persicaria maculosa genome assembly, chromosome: 11.
OY998261.1:55236333-55236353
TTTTCGAGGGCGTTCTTGGCCTCCACCTTC55236333TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCCTACACCATT
Persicaria maculosa genome assembly, chromosome: 16.
OY998266.1:2281693-2281713
TTCTCGAGGGCGTTCTTTGCCTCCACCTTC2281693TTCTTGTGCTCCTCATCTTCAGACTTATACTTCTCGGCCTCCTGCACCATT
Persicaria maculosa genome assembly, chromosome: 18.
OY998268.1:41527282-41527302
TTCTCAAGGGCATTCTTGGCCTCCACCTTC41527282TTCTTGTGCTCCTCATCTTCAGACTTGTACTTCTCAGCCTCCTGGACCATT
Lathyrus sativus genome assembly, chromosome: 3.
OZ012737.1:44688101-44688121
TTCTCCAACGAGTTCTTTGCCTCCACCTTC44688101TTCTTGTGCTCCTCATCTTCACTCTTGTACTTCTCTGCTTCTTGAACCATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTGTGCTCCTCATCTTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTGTGCTCCTCATCTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.227 | 2.218 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTGTGCTCCTCATCTTCA&k=0&no_gap=0&offset=0&limit=50
2.363 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAGATGAGGAGCACAAGAA&k=0&no_gap=0&offset=0&limit=0
2.363 | 0.000 | cgi_end;

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