GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:05:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2003088373-A/1: A Caffeine Synthase and A Gene thereof.
BD285420.1:1379-1402
GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA
JP 2003088373-A/2: A Caffeine Synthase and A Gene thereof.
BD285421.1:1379-1402
GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA
Camellia sinensis mRNA, clone: SS08B12, 5' end sequence, expressed in shoot stems.
FS952720.1:249-272
GAAATGAGAAGTTGAACATGAAATTTTAAT249TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT
ZYta110 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GH159040.1:882-905
GAAATGAGAAGTTGAACATGAAATTTTAAT882TTCTTTACCTTATGTATGTATGGAATTAGTGGTTG
PA_T348_TRA_5422 Camellia assamica PA1 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS391644.1:520-543
AGAAATGAGAAGTTGAGCATGAAATTTAAT520TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTGA
Tea031_2005-11-02_1/Tea031_H04_009_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK479739.1:223-246
GAAATGAGAAGNTGAACATGAAATTTTAAT223TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGNNNNNNGNNNAANAAAA
TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:1462-1485
GAAATGAGAAGTTGAACATGAAATTTTAAT1462TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT
TSA: Camellia sinensis tea_rep_c1123 mRNA sequence.
KA280564.1:1896-1919
GAAATGGGAAGTTGAATATGAAATTTTAAT1896TTCTTTACCTTATGTATGTATGGAAT
TSA: Camellia sinensis tea_rep_c2762 mRNA sequence.
KA282189.1:1431-1454
AGAAATGAGAAGTTGAACATGAAATTTTAA1431TTCTTTACCTTATGTATGTATGGAATTAGTGGTTG
Camellia irrawadiensis ICS1 mRNA for theobromine synthase, complete cds.
AB056108.1:1379-1402
GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA
Camellia irrawadiensis ICS2 mRNA for theobromine synthase, complete cds.
AB207816.1:1316-1339
GAAATGAGAAGTTGAACATGAAATTTTAAT1316TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAAAGTCT
Camellia sinensis caffeine synthase 2 (TCS2) gene, complete cds.
JX647691.1:6471-6494
GAAATGAGAAGTTGAACATGAAATTTTAAT6471TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT
Camellia sinensis caffeine synthase 4 (TCS4) gene, complete cds.
JX647693.1:6429-6452
GAAATGAGAAGTTGAACATGAAATTTTAAT6429TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTCCTAAAAATAACGTCT
Camellia sinensis caffeine synthase 6 (TCS6) pseudogene, complete sequence.
JX647695.1:5655-5678
AAATGAGAAGTTTGAACATGAAATTTTAAT5655TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT
ZDSB28F LIB-EST ZDSB (Zhenghe Dabaicha sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone ZDSB28, mRNA sequence.
JZ495071.1:90-113
AGACGTTATTTTTAGCAAACAACCACTAAT90TCCATACATACATAAGGTAAAGAAATTAAAATTTCATGTTCAACTTCTCATTTC
TSA: Camellia sinensis tea_rep_c691 mRNA sequence.
KA280133.1:20-43
AGTTCAAACAACCACTAAT20TCCATACATACATAAGGTAAAGAATTAAAATTTCATGTTCAACTTCTCATTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTTACCTTATGTATGTATGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTTACCTTATGTATGTATGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.462 | 0.453 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTTACCTTATGTATGTATGGA&k=0&no_gap=0&offset=0&limit=50
0.610 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=TCCATACATACATAAGGTAAAGAA&k=0&no_gap=0&offset=0&limit=36
0.612 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).