GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 04:09:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4691.
FX698298.1:1568-1589
AAATGAATAAAGGTTCACAAGATACAAGAA1568TTGAAATCAAATGAGAGTGACGAATTTGATTTTGAAGATCTAAAAAACGCGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6619.
FX732677.1:1532-1553
AAATGAATAAAGGTTCACAAGATACAAGAA1532TTGAAATCAAATGAGAGTGACGAATTTGATTTTGAAGATCTAAAAAACGCGA
lke36c12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ072273.1:384-405
AAATGAATAAAGGTTCACAAGATACAAGAA384TTGAAATCAAATGAGAGTGACGAATTTTATTTTGAAGATCTAAAAAACGCGA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:63502960-63502981
AAATGAATAAAGGTTCAAAAGATACAAGAA63502960TTGAAATCAAATGAGAGTGACGAATTTGATTTTGAAGATCTAAAAAACGCGA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:47325390-47325411
AAATGAATAAAGGTTCACAAGATACAAGAA47325390TTGAAATCAAATGAGAGTGACGAATTTGATTTTGAAGATCTAAAAAACGCGA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:34149168-34149189
AAATGAATAAAGGTTCACAAGATACAAGAA34149168TTGAAATCAAATGAGAGTGACGAATTTGATTTTGAAGATCTAAAAAACGCGA
Brassica rapa genome, scaffold: A09.
LR031568.1:51568584-51568605
AAATGAATAAAGGTTCACAAGATACAAGAA51568584TTGAAATCAAATGAGAGTGACGAATTTGATTTTGAAGATCTAAAAAACGCGA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:43439140-43439161
AAATGAATAAAGGTTCACAAGATACAAGAA43439140TTGAAATCAAATGAGAGTGACGAATTTTATTTTGAAGATCTAAAAAACGCGA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:62041550-62041571
AAATGAATAAAGGTTCACAAGATACAAGAA62041550TTGAAATCAAATGAGAGTGACGAATTTGATTTTGAAGATCTAAAAAACGCGA
Brassica rapa subsp. pekinensis mRNA, clone: BRest08-O05, 5'-end sequence.
DC846090.1:43-64
TCGCGTTTTTTAGATCTTCAAAATCAAATT43CGTCACTCTCATTTGATTTCAATTCTTGTATCTTGTGAACCTTTATTCATTT
Brassica oleracea var. viridis mRNA, clone: KALE-007P21, 5' end sequence.
DK458611.1:58-79
TCGCGTTTTTTAGATCTTCAAAATAAAATT58CGTCACTCTCATTTGATTTCAATTCTTGTATCTTGTGAACCTTTATTCATTT
BR119852 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-65F12 5', mRNA sequence.
EX136022.1:36-57
TCGCGTTTTTTAGATCTTCAAAATCAAATT36CGTCACTCTCATTTGATTTCAATTCTTGTATCTTGTGAACCTTTATTCATTT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:7633734-7633755
TCGCGTTTTTTAGATCTTCAAAATAAAATT7633734CGTCACTCTCATTTGATTTCAATTCTTGTATCTTGTGAACCTTTATTCATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGAAATCAAATGAGAGTGACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGAAATCAAATGAGAGTGACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.140 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=TTGAAATCAAATGAGAGTGACG&k=0&no_gap=0&offset=0&limit=50
0.285 | 0.146 | search_minus_done; http://172.18.8.135:50400/match?q=CGTCACTCTCATTTGATTTCAA&k=0&no_gap=0&offset=0&limit=41
0.288 | 0.003 | cgi_end;

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