GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 09:44:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH070I10, complete sequence.
AC172879.2:5106-5125
GATTGAGAGGCTCGTTCATGATGCAAAATA5106TTGAATGGGGTGGTTGCTTTGATTTTCTTCTTTACCGGCTCAAATCAATC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:64015881-64015900
GATTGAGAGGCTCGTTCATGATGCAAAATA64015881TTGAATGGGGTGGTTGCTTTGATTTTCTTCTTTACCGGCTCAAATCAATC
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:12836533-12836552
GAGAGAGAGGCTCGTTCATGATGCAAAATA12836533TTGAATGGGGTGGTTGCTTTGATTTTCTTCTTTACCGGCTCAAATCAATC
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:32830127-32830146
GATTGAGAGGCTCGTTCATGATGCAAAATA32830127TTGAATGGGGTGGTTGCTTTGATTTTCTTCTTTACCGGCTCAAATCAATC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:41783544-41783563
ATTGAGAGGCTCGTTCATGATGCAAAATAT41783544TTGAATGGGGTGGTTGCTTTGATTTTCTTCTTTACCGGCTCAAACCAATC
Epistrophella euchroma genome assembly, chromosome: 3.
OX346247.1:37741989-37742008
TCGTCAACGAAGTTAATTAATCGAAATCGC37741989TTGAATGGGGTGGTTGCTTTCCAGGTGGTTTGAACTATTTATAACCTTTT
Ceriagrion tenellum genome assembly, chromosome: 6.
OY720637.1:89970827-89970846
TCTCCGGAAAAGACCGCGGAAATGATGGGG89970827TTGAATGGGGTGGTTGCTTTTCCCTCGCGTGACTCATGATAACAGAACAA
0191261 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093392.1:370-389
GATTGGTTTGAGCCGGTAAAGAAGAAAATC370AAAGCAACCACCCCATTCAAATATTTTGCATCATGAACGTGCCTCTAAAT
BNAOV1GH_T3_023_H06_12JULY2007_034 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR441691.1:300-319
GATTGGTTTGAGCCGGTAAAGAAGAAAATC300AAAGCAACCACCCCATTCAAATATTTTGCATCATGAACGTGCCTCTAAAT
KBrB093I12R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB093I12, genomic survey sequence.
DX080838.1:674-693
GATTGATTTGAGCCGGTAAAGAAGAAAATC674AAAGCAACCACCCCATTCAATATTTTGCATCATGAACGAGCCTCTCAATC
KBrB093I12F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB093I12, genomic survey sequence.
ED510608.1:691-710
GATTGATTTGAGCCGGTAAAGAAGAAAATC691AAAGCAACCACCCCATTCAATATTTTGCATCATGAACGAGCCTCTCAATC
KBrB109I24F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB109I24, genomic survey sequence.
ED521911.1:691-710
GATTGATTTGAGCCGGTAAAGAAGAAAATC691AAAGCAACCACCCCATTCAATATTTTGCATCATGAACGAGCCTCTCAATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
AC189437.2:107649-107668
GATTGGTTTGAGCCGGTAAAGAAGAAAATC107649AAAGCAACCACCCCATTCAAATATTTTGCATCATGAACGTGCCTCTCAAT
Brassica rapa genome, scaffold: A03.
LR031572.1:2806363-2806382
GATTGATTTGAGCCGGTAAAGAAGAAAATC2806363AAAGCAACCACCCCATTCAATATTTTGCATCATGAACGAGCCTCTCAATC
Brassica rapa genome, scaffold: A03.
LR031572.1:21262425-21262444
GATTGATTTGAGCCGGTAAAGAAGAAAATC21262425AAAGCAACCACCCCATTCAATATTTTGCATCATGAACGAGCCTCTCTCTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:2811973-2811992
GATTGATTTGAGCCGGTAAAGAAGAAAATC2811973AAAGCAACCACCCCATTCAATATTTTGCATCATGAACGAGCCTCTCAATC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21389033-21389052
GATTGATTTGAGCCGGTAAAGAAGAAAATC21389033AAAGCAACCACCCCATTCAATATTTTGCATCATGAACGAGCCTCTCTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGAATGGGGTGGTTGCTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGAATGGGGTGGTTGCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=TTGAATGGGGTGGTTGCTTT&k=0&no_gap=0&offset=0&limit=50
0.360 | 0.264 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGCAACCACCCCATTCAA&k=0&no_gap=0&offset=0&limit=43
0.367 | 0.007 | cgi_end;

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