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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:14:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:23583854-23583879
ATTATGTTATCGTAATATGTTTTCCTTTCA23583854TTGACAGAGAGCCATCTTGCTCTGGACTCTTGAACCTGGTGAGCGTGATGCCTTGT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:30846953-30846978
ACAAGGCATCACGCTCACCAGGTTCAAGAG30846953TCCAGAGCAAGATGGCTCTCTGTCAATGAAAGGAAAACATATTAAGATAACATAAT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:27298620-27298645
ACAAGGCATCACGCTCACCAGGTTCAAGAG27298620TCCAGAGCAAGATGGCTCTCTGTCAATGAAAGGAAAACATATTAAGATAACATAAT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:32986279-32986304
ACAAGGCATCACGCTCACCAGGTTCAAGAG32986279TCCAGAGCAAGATGGCTCTCTGTCAATGAAAGGAAAACATATTACGATAACATAAT
Brassica rapa genome, scaffold: A05.
LR031570.1:33303640-33303665
ACAAGGCATCACGCTCACCAGGTTCAAGAG33303640TCCAGAGCAAGATGGCTCTCTGTCAATGAAAGGAAAACATATTAAGATAACATAAT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:31824002-31824027
ACAAGGCATCACGCTCACCAGGTTCAAGAG31824002TCCAGAGCAAGATGGCTCTCTGTCAATGAAAGGAAAACATATTACGATAACATAAT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:29961638-29961663
ACAAGGCATCACGCTCACCAGGTTCAAGAG29961638TCCAGAGCAAGATGGCTCTCTGTCAATGAAAGGAAAACATATTAAGATAACATAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGACAGAGAGCCATCTTGCTCTGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGACAGAGAGCCATCTTGCTCTGGA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=TTGACAGAGAGCCATCTTGCTCTGGA&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=TCCAGAGCAAGATGGCTCTCTGTCAA&k=0&no_gap=0&offset=0&limit=49
0.156 | 0.004 | cgi_end;

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