GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:59:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2007049961-A/1: Method of judging harvest time of apple fruits.
DD491760.1:1070-1093
GAGCGCTTTTGAGCGCATCGCATAAAATTA1070TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACCATTTTATGTATGT
JP 2010226984-A/1: Prognostic method for long-shelf life of fruit in apple breeding.
FW568223.1:1039-1062
AGAAAGCTTTGAGAGCATAGCATAAAATTA1039TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTATGTATGT
JP 2010226984-A/2: Prognostic method for long-shelf life of fruit in apple breeding.
FW568224.1:1067-1090
AGAAAGCTTTGAGAGCATAGCATAAAATTA1067TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTATGTATGT
Malus x domestica MdACS3a gene for 1-aminocyclopropane-1-carboxylic acid synthase 3a, complete cds.
AB243060.2:1039-1062
AGAAAGCTTTGAGAGCATAGCATAAAATTA1039TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTATGTATGT
Pyrus communis 1-aminocyclopropene-1-carboxylate synthase 3a (ACS3a) gene, 5' flanking region and partial cds.
AY388990.1:1182-1205
AGAAAGCCTTGAGAGCATAGCATAAAATTA1182TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTATGTATGT
Pyrus communis 1-aminocyclopropane-1-carboxylate synthase 2a (DACS2a) gene, 5' flanking region and partial cds.
AY388991.1:899-922
AGAAAGCCTTGAGAGCATAGCATAAAATTA899TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTTATGTATG
Pyrus communis 1-aminocyclopropane-1-carboxylate synthase 2b (DACS2b) gene, 5' flanking region and partial cds.
AY388992.1:1221-1244
AGAAAGCCTTGAGAGCATAGCATAAAATTA1221TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTATGTATGT
Pyrus communis 1-aminocyclopropene-1-carboxylate synthase 3a (ACS3a) gene, promoter region and partial cds.
AY442144.1:1183-1206
AGAAAGCCTTGAGAGCATAGCATAAAATTA1183TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTATGTATGT
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:36873660-36873683
AGAAAGCTTTGAGAGCATAGCATAAAATTA36873660TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACCACTTTATGTATGT
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:40209097-40209120
AGAAAGCTTTGAGAGCATAGCATAAAATTA40209097TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACCATTTTATGTATGT
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:36179704-36179727
AGAAAGCTTTGAGAGCATAGCATAAAATTA36179704TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACCATTTTATGTATGT
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:37300606-37300629
AGAAAGCTTTGAGAGCATAGCATAAAATTA37300606TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACTACTTTATGTATGT
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:36519057-36519080
AGAAAGCTTTGAGAGCATAGCATAAAATTA36519057TTGACAGTTGTTGGGTACATGTAGGTGATGAGATTAAAACCACTTTATGTATGT
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:31769823-31769846
TCCGTCCTTGGAGAGCATAGCATAAAATTA31769823TTGACAGTTGTTGGGTACATGTAGGTGATGAGATAAAAACTACTTTGATGTATG
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:23441779-23441802
AGAAAGCTTTGAGAGCATAGCATAAAATTA23441779TTGACAGTTGTTGGGTACATGTAGGTGATGATATTAAAACTACTTTTATGTATG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:4955461-4955484
CATACATCAAAGTAGTTTTTATCTCATCAC4955461CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCCAAGGACGGA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:5349796-5349819
CATACATCAAAGTAGTTTTTATCTCATCAC5349796CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCATTCT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:16126653-16126676
ACATACATAAAGTAGTTTTAATCTCATCAC16126653CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCTTTCT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:14647046-14647069
ACATACATAAAGTAGTTTTAATCTCATCAC14647046CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCTTTCT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:15991022-15991045
ACATACATAAAGTAGTTTTAATCTCATCAC15991022CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCTTTCT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:16264980-16265003
ACATACATAAAATGGTTTTAATCTCATCAC16264980CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCTTTCT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:16170631-16170654
ACATACATAAAATGGTTTTAATCTCATCAC16170631CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCTTTCT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:16237458-16237481
ACATACATAAAGTAGTTTTAATCTCATCAC16237458CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCTTTCT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:16086727-16086750
ACATACATAAAATGGTTTTAATCTCATCAC16086727CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCTTTCT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:13098634-13098657
ACATACATAAAGTAGTTTTAATCTCATCAC13098634CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAGGCTTTCT
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:4217159-4217182
CATACATCAAAGTAGTTTTTATCTCATCAC4217159CTACATGTACCCAACAACTGTCAATAATTTTATGCTATGCTCTCAAAGCATTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGACAGTTGTTGGGTACATGTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGACAGTTGTTGGGTACATGTAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.149 | 0.140 | search_plus_done; http://172.18.8.135:50400/match?q=TTGACAGTTGTTGGGTACATGTAG&k=0&no_gap=0&offset=0&limit=50
0.193 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=CTACATGTACCCAACAACTGTCAA&k=0&no_gap=0&offset=0&limit=35
0.200 | 0.007 | cgi_end;

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