GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:21:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_24355.
FX702320.1:627-646
TTTAATCCTGGCTCTTGTTATAATTCCGAA627TTGACCCAAACCTCCTAACGCCGCGTAGAAAAGATCTGAGTTCATGTCGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 130 unordered pieces.
AC234725.2:62917-62936
TTTAATCCTGGCTCTTGTTATAATTCCGAA62917TTGACCCAAACCTCCTAACGCCGCGTAGAAAAGATCTGAGTTCATGTCGT
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 6.
CP094636.1:28071828-28071847
TTTAATTCTGGCTCTTGTGATTATTCCAAA28071828TTGACCCAAACCTCCTAACGCGGCGAAGAAAAGATCCGAGTTCATATCTT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:57404711-57404730
TTTAATCCTGGCTCTTGTTATAATTCCGAA57404711TTGACCCAAACCTCCTAACGCCGCGTAGAAAAGATCTGAGTTCGTGTCGT
Camelina sativa cultivar CO46 chromosome 18.
CP131548.1:18379698-18379717
TTTAATCCGGGCTCTTGTGATTATTCCAAA18379698TTGACCCAAACCTCCTAACGCGGCGAAGAAAAGGTCCGAGTTCATATATT
Camelina sativa cultivar CO46 chromosome 2.
CP131550.1:26171841-26171860
TTTAATTCTGGCTCTTGTGATTATTCCAAA26171841TTGACCCAAACCTCCTAACGCGGCGAAGAAAAGATCCGAGTTCATATCTT
Capsella bursa-pastoris isolate WGS_leaf chromosome 8.
CP144190.1:14767165-14767184
TTTAATTCTGGCTCTTGTTATAATTCCGAA14767165TTGACCCAAACCTCCTAACGCGGCGAAGAAAAGATCCGAGTTCATATCTT
Capsella bursa-pastoris isolate WGS_leaf chromosome 16.
CP144198.1:13851596-13851615
TTTAATTCTGGCTCTTGTTATAATTCCGAA13851596TTGACCCAAACCTCCTAACGCGGCGAAGAAAAGATCCGAGTTCATATCTT
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:16725406-16725425
TTTAATCCTGGCTCTTGTTATAATCCCGAA16725406TTGACCCAAACCTCCTAACGCCGCGTAGAAAAGATCTGAGTTCGTGTCGT
Cochlearia excelsa genome assembly, chromosome: 5.
OY748331.1:29237997-29238016
TTTAATTCTAGCTCTTGTTATTATCCCAAA29237997TTGACCCAAACCTCCTAACGTGGCGAAGAAAAGATCTGAATTTATGTCTT
JP 2018532405-A/7: Brassica plants with altered properties in seed production.
MC026326.1:1767-1786
ACGACATGAACTCAGATCTTTTCTACGCGG1767CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
JP 2018532405-A/8: Brassica plants with altered properties in seed production.
MC026327.1:665-684
ACGACATGAACTCAGATCTTTTCTACGCGG665CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
JP 2018532405-A/11: Brassica plants with altered properties in seed production.
MC026330.1:1756-1775
ACGACACGAACTCAGATCTTTTCTACGCGG1756CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
JP 2018532405-A/12: Brassica plants with altered properties in seed production.
MC026331.1:668-687
ACGACACGAACTCAGATCTTTTCTACGCGG668CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Sequence 10 from Patent WO2017064173.
MS986572.1:1767-1786
ACGACATGAACTCAGATCTTTTCTACGCGG1767CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Sequence 11 from Patent WO2017064173.
MS986573.1:665-684
ACGACATGAACTCAGATCTTTTCTACGCGG665CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Sequence 16 from Patent WO2017064173.
MS986578.1:1756-1775
ACGACACGAACTCAGATCTTTTCTACGCGG1756CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Sequence 17 from Patent WO2017064173.
MS986579.1:668-687
ACGACACGAACTCAGATCTTTTCTACGCGG668CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
KR 1020220154786-A/174: TOPICAL APPLICATION OF POLYNUCLEOTIDE MOLECULES FOR IMPROVING YIELD TRAITS OF PLANTS.
PE231965.1:665-684
ACGACATGAACTCAGATCTTTTCTACGCGG665CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
KR 1020220154786-A/177: TOPICAL APPLICATION OF POLYNUCLEOTIDE MOLECULES FOR IMPROVING YIELD TRAITS OF PLANTS.
PE231968.1:668-687
ACGACACGAACTCAGATCTTTTCTACGCGG668CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
BR066911 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-074B09 5', mRNA sequence.
EX082267.1:192-211
ACGACATGAACTCAGATCTTTTCTACGCGG192CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
BN24DYSC_UP_018_E06_1FEB2008_040 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG572349.1:290-309
ACGACACGAACTCAGATCTTTTCTACGCGG290CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:6687451-6687470
ACGACATGAACTCAGATCTTTTCTACGCGG6687451CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:6424435-6424454
ACGACATGAACTCAGATCTTTTCTACGCGG6424435CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:9240661-9240680
ACGACACGAACTCAGATCTTTTCTACGCGG9240661CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica rapa cytokinin oxidase (CKX3) mRNA, partial cds.
HM587035.1:167-186
ACGACATGAACTCAGATCTTTTCTACGCGG167CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica juncea cytokinin oxidase (ckx3) mRNA, complete cds.
KM040767.1:668-687
ACGACATGAACTCAGATCTTTTCTACGCGG668CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica napus cytokinin oxidase/dehydrogenase 3-2 (CKX3-2) mRNA, partial cds.
KP872729.1:685-704
ACGACATGAACTCAGATCTTTTCTACGCGG685CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica napus cytokinin oxidase/dehydrogenase 3-3 (CKX3-3) mRNA, partial cds.
KP872730.1:290-309
ACGACACGAACTCAGATCTTTTCTACGCGG290CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica rapa genome, scaffold: A02.
LR031573.1:6302897-6302916
ACGACATGAACTCAGATCTTTTCTACGCGG6302897CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:10789677-10789696
ACGACACGAACTCAGATCTTTTCTACGCGG10789677CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:7534149-7534168
AAGACATGAACTCAGATCTTTTCTATGCCG7534149CGTTAGGAGGTTTGGGTCAATTCGGAATAATAACAAGAGCAAGAATCAAA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:6478473-6478492
ACGACATGAACTCAGATCTTTTCTACGCGG6478473CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGGATTAAA
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:2645685-2645704
AAGACATGAACTCGGATCTTTTTTTCGCCG2645685CGTTAGGAGGTTTGGGTCAATTCGGAATCATAACAAGAGCCAGAATTAAA
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:7534149-7534168
AAGACATGAACTCAGATCTTTTCTATGCCG7534149CGTTAGGAGGTTTGGGTCAATTCGGAATAATAACAAGAGCAAGAATCAAA
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:26892730-26892749
ACGACACGAACTCAGATCTTTTCTACGCGG26892730CGTTAGGAGGTTTGGGTCAATTCGGGATTATAACAAGAGCCAGGATTAAA
Lepidium didymum genome assembly, chromosome: 14.
OY986986.1:7742775-7742794
AAGACATGAACTCGGATCTTTTCTTCGCCG7742775CGTTAGGAGGTTTGGGTCAATTCGGAATTATAACAAGAGCCAGAATCAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGACCCAAACCTCCTAACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGACCCAAACCTCCTAACG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.105 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=TTGACCCAAACCTCCTAACG&k=0&no_gap=0&offset=0&limit=50
0.787 | 0.682 | search_minus_done; http://172.18.8.135:50400/match?q=CGTTAGGAGGTTTGGGTCAA&k=0&no_gap=0&offset=0&limit=40
0.804 | 0.017 | cgi_end;

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