GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 09:06:04, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:64564066-64564085
GGGTCAGGTAAGTAACGTGTGGGAGCAGTC64564066TTGACTGCAGGAAATGCAAGAACTTGTTGGACTATGCTCATTGTCATCTT
Eutrema japonicum cultivar Magic isolate CNU_PCGL_DJ_WASABI_2024 chromosome A07.
CP163467.1:4136129-4136148
TCAGGCAAGTAATAACCCATAGGAGCAGTC4136129TTGACTGCAGGAAATGCAAGACCTTGTTGGTGAACTCTGCTCAGTGTCAT
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:3987142-3987161
AAGATGACAATGAGCATAGTCCAACAAGTT3987142CTTGCATTTCCTGCAGTCAAGACTGCTCCCACACGTTACTTACCTGACCC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:4598856-4598875
AAGATGACAATGAGCATAGTCCAACAAGTT4598856CTTGCATTTCCTGCAGTCAAGACTGCTCCCACACGTTACTTACCTGACCC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:4774198-4774217
AAGATGACAATGAGCATAGTCCAACAAGTT4774198CTTGCATTTCCTGCAGTCAAGACTGCTCCCACACGTTACTTACCTGACCC
Agrochola macilenta genome assembly, chromosome: 24.
OU753576.1:12327769-12327788
ACTGACAGATACCTAGCAGTTGATTGAAAA12327769CTTGCATTTCCTGCAGTCAAGACGTCGTTTCTTACACCGTGGTATATTAG
Mimachlamys varia genome assembly, chromosome: 19.
OX392545.1:35414941-35414960
ATCGAAAAACGGCCAGTCTTGAAAGTAAGC35414941CTTGCATTTCCTGCAGTCAAAACTATGTTGAAATTATGCCGGCTTTGAGA
Mesapamea secalis genome assembly, chromosome: 7.
OZ220978.1:22141223-22141242
GGCCAGTTTTTTTCTTTATTTTCATCATCA22141223CTTGCATTTCCTGCAGTCAACAATATGGAAGAGTTAGGAACGTATCTTCA
Triturus cristatus genome assembly, chromosome: 1_2.
OZ123757.1:868925824-868925843
TGTCATTAGTGGTACCAAAATACCAAGCAA868925824CTTGCATTTCCTGCAGTCAATAAAGTTGCGGGAAGCACAGATGTGCAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGACTGCAGGAAATGCAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGACTGCAGGAAATGCAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.236 | 0.226 | search_plus_done; http://172.18.8.135:50800/match?q=TTGACTGCAGGAAATGCAAG&k=0&no_gap=0&offset=0&limit=50
0.315 | 0.080 | search_minus_done; http://172.18.8.135:50800/match?q=CTTGCATTTCCTGCAGTCAA&k=0&no_gap=0&offset=0&limit=48
0.320 | 0.005 | cgi_end;

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