GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 10:11:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

LLAE0517S Spider Loxosceles laeta cDNA library Loxosceles laeta cDNA 5', mRNA sequence.
EY188889.1:376-395
TTTCATACTGCATATAAAATTAACTTTTAG376TTGATTCCCATTACCCCAAATGATCCATCAGAAGTATAAAATACTGTATT
Rattus norvegicus clone CH230-32F8, WORKING DRAFT SEQUENCE, 8 ordered pieces.
AC136253.2:212993-213012
ACATCAGAAAACCACAGTGGTCAGGCTGCC212993TTGATTCCCATTACCCCAAAAGCCATTTCCCATCAACCCTGAAGTAAAAA
Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:57354307-57354326
TTACTACACTTTACATTTTCCAGTTCTCTT57354307TTGATTCCCATTACCCCAAATCCTTTTATTTTTCATGCAATTTAAGTTTT
Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:57694646-57694665
TTACTGCACTTTACATTTTCCAGTTCTCTT57694646TTGATTCCCATTACCCCAAATCCTTTTATTTTTCATGCAATTTAAGTTTC
Vitis rotundifolia cultivar Noble chromosome 2.
CP092927.1:2478583-2478602
AAGAAAAATCAAGTCTGATCATTGCGGTCC2478583TTGATTCCCATTACCCCAAAAAGGAAAATGAAATGTGAAACAAAAGAAAA
Agonum fuliginosum genome assembly, chromosome: 17.
OX384046.1:10386636-10386655
TGCAGTACTTGAAAAAGACAGACTTTCTGT10386636TTGATTCCCATTACCCCAAACAATTTAGTTTTGAAATAGTAGGTCAATAC
Stratiomys singularior genome assembly, chromosome: 2.
OX940878.1:26845942-26845961
GTTATTATTTATATTTGATGTGTTATTTCG26845942TTGATTCCCATTACCCCAAACATATTTTACTCGGGGGTACTTGGAAACAA
Plagodis dolabraria genome assembly, chromosome: 18.
OY978458.1:15317834-15317853
TATTATTATTAGTGGGGTAATGGTACCCAG15317834TTGATTCCCATTACCCCAAATGGCTATTTTAGAATTACCTACAACAATAT
Peromyscus eremicus genome assembly, chromosome: 10.
OX460404.1:66466556-66466575
TTTTCACTTCAGGGTTGATGGGAAATGGCT66466556TTTGGGGTAATGGGAATCAAGGCAGCCTGACCACAGTGGTTTTCTGGCTG
Peromyscus eremicus genome assembly, chromosome: 10.
OX460476.1:66243655-66243674
TTTTCACTTCAGGGTTGATGGGAAATGGCT66243655TTTGGGGTAATGGGAATCAAGGCAGCCTGACCACAGTGGTTTTCTGGCTG
Rattus norvegicus clone CH230-11D12, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC096136.7:163810-163829
TTTTTACTTCAGGGTTGATGGGAAATGGCT163810TTTGGGGTAATGGGAATCAAGGCAGCCTGACCACTGTGGTTTTCTGATGT
Rattus norvegicus clone CH230-171L2, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC121445.4:145838-145857
TTTTTACTTCAGGGTTGATGGGAAATGGCT145838TTTGGGGTAATGGGAATCAAGGCAGCCTGACCACTGTGGTTTTCTGATGT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 11.
CP124709.1:35961095-35961114
GTAGGATTTGGTCAGGTAGGGTTTGGGGAT35961095TTTGGGGTAATGGGAATCAAAATTTCTTACAATTGGAGTGTTGGGGGTAC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 4.
CP124716.1:117899837-117899856
GTGCTGCAGAGTCGGATCAGTTTTAGGGAT117899837TTTGGGGTAATGGGAATCAAAATTAATTGTAATTGGAGTGGTGGGGGTAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGATTCCCATTACCCCAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGATTCCCATTACCCCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.167 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=TTGATTCCCATTACCCCAAA&k=0&no_gap=0&offset=0&limit=50
0.189 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGGGGTAATGGGAATCAA&k=0&no_gap=0&offset=0&limit=42
0.193 | 0.004 | cgi_end;

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