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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-09 16:30:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:27246251-27246270
AATCTACAAGCTCAAATACACAAAGGCATG27246251TTGCATGCAGTTCCCTACTGCATGCTGGAGGGCAGGAATGTAACAAAAAC
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:15936213-15936232
TCTACAAGCTCAAATACACAAAAAGGCATG15936213TTGCATGCAGTTCCCTACTGCATGCTGCTGGAGGGCAGGAATGTAACAAA
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:15882926-15882945
TCTACAAGCTCAAATACACAAAAAGGCATG15882926TTGCATGCAGTTCCCTACTGCATGCTGCTGGAGGGCAGGAATGTAACAAA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:15957563-15957582
TCTACAAGCTCAAATACACAAAAAGGCATG15957563TTGCATGCAGTTCCCTACTGCATGCTGCTGGAGGGCAGGAATGTAACAAA
Musa schizocarpa genome assembly, chromosome: S06.
LS990921.1:13373256-13373275
TCTACAAGCTCAAATACACAAAAAGGCATG13373256TTGCATGCAGTTCCCTACTGCATGCTGGAGGGCAGGAATGTAACAAAAAC
Platycnemis pennipes genome assembly, chromosome: 4.
OW121850.1:99166252-99166271
TTTCATGCTTTTACACTTATGATGAATTCT99166252TTGCATGCAGTTCCCTACTGCATACACGTAGTCCAAAGGATCATGAAGCA
Protophormia terraenovae genome assembly, chromosome: 5.
OX596077.1:76636619-76636638
CAACCTAAAATTGAAGGATAGAAACGAAAC76636619TTGCATGCAGTTCCCTACTGACATTTTATATACACTGTAAATAATTTTAT
Aphodius sticticus genome assembly, chromosome: X.
OZ014515.1:11326864-11326883
ACTACAGATAACTGTTACTTCCAGTAGTTC11326864CAGTAGGGAACTGCATGCAAACCCCAACAGCTGGTAGTGGCGCTCGCGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGCATGCAGTTCCCTACTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGCATGCAGTTCCCTACTG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.370 | 0.362 | search_plus_done; http://172.18.8.135:50400/match?q=TTGCATGCAGTTCCCTACTG&k=0&no_gap=0&offset=0&limit=50
0.459 | 0.089 | search_minus_done; http://172.18.8.135:50400/match?q=CAGTAGGGAACTGCATGCAA&k=0&no_gap=0&offset=0&limit=43
0.460 | 0.001 | cgi_end;

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