GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:05:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST1232361 ESTSYN-F Musa acuminata AAA Group cDNA clone pESTSYNF-6C17 5', mRNA sequence.
ES432154.1:151-170
ATAATTGACAATTCTCCACAGGTTTTCCAT151TTGCATGTTAACAACGGCATACCAATTGAGAGTTGGTTTGATGACCCATC
estPama_needle_2159-800_3 Pama-Needle-EST Picea mariana cDNA 3', mRNA sequence.
JZ082404.1:8-27
TTTTTTT8TTGCATGTTAACAACGGCATCACGCCGTATACATTTTATTTATATCTGAT
TSA: Musa acuminata AAA Group Unigene67075_B1 mRNA sequence.
JV315703.1:160-179
ATAATTGACAATTCTCCACAGGTTTTCCAT160TTGCATGTTAACAACGGCATACCAATTGAGAGTTGGTTTGATGACCCATC
TSA: Musa acuminata AAA Group Unigene75073_NK1 mRNA sequence.
JV388047.1:160-179
ATAATTGACAATTCTCCACAGGTTTTCCAT160TTGCATGTTAACAACGGCATACCAATTGAGAGTTGGTTTGATGACCCATC
Musa troglodytarum cultivar karat chromosome 4.
CP097506.1:15026993-15027012
GATGGGTCATCAAACCAACTCTCGATTGGT15026993ATGCCGTTGTTAACATGCAAATGGAAAACCTGAAAATATGGGGAGATAAA
Musa acuminata subsp. malaccensis isolate AA chromosome 4.
CP126373.1:11379767-11379786
GATGGGTCATCAAACCAACTCTCAATTGGT11379767ATGCCGTTGTTAACATGCAAATGGAAAACCTGAAAAATAAGGGGAGAGAA
Musa acuminata subsp. malaccensis isolate AA chromosome 15.
CP126384.1:11424647-11424666
GATGGGTCATCAAACCAACTCTCAATTGGT11424647ATGCCGTTGTTAACATGCAAATGGAAAACCTGAAAAATAAGGGGAGAGAA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:11197401-11197420
GATGGGTCATCAAACCAACTCTCAATTGGT11197401ATGCCGTTGTTAACATGCAAATGGAAAACCTGAAAAATAAGGGGAGAGAA
Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:12482534-12482553
GATGGGTCATCAAACCAACTCTCAATTGGT12482534ATGCCGTTGTTAACATGCAAATGGAAAACCTGAAAAATAAGGGGAGAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGCATGTTAACAACGGCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGCATGTTAACAACGGCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.264 | 0.255 | search_plus_done; http://172.18.8.135:50400/match?q=TTGCATGTTAACAACGGCAT&k=0&no_gap=0&offset=0&limit=50
0.289 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=ATGCCGTTGTTAACATGCAA&k=0&no_gap=0&offset=0&limit=46
0.292 | 0.003 | cgi_end;

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