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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:49:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x domestica NBS-LRR resistance gene-like protein ARGH17 gene, partial cds.
AY369216.1:77-96
TTCATCCTATGTTCCAATTCAAAAGTTTCC77TTGCCGACGTTCGTGATGCTACAAGTAAACATGGTCTGGTTGATTTGCAA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:32867988-32868007
TTCATCCTATGTTCCAATTCAAAAGTTTCC32867988TTGCCGACGTTCGTGATGCTACAAGTAAACATGGTCTGGTTGATTTGCAA
Malus floribunda clone ABGA002048CT putative NBS-LRR disease resistance protein gene, partial cds.
DQ644353.1:57-76
TTCATCCTATGTTCCAATTCAAAAGTTTCC57TTGCCGACGTTCGTGATGCTACAAGTAAACATGGTCTGGTTGATTTGCAA
Malus floribunda clone ABGA003044CT putative NBS-LRR disease resistance protein gene, partial cds.
DQ644380.1:57-76
TTCATCCTATGTTCCAATTCAAAAGTTTCC57TTGCCGACGTTCGTGATGCTACAAGTAAACATGGTCTGGTTGATTTGCAA
Malus x domestica clone Florina BAC 36I17, complete sequence.
GU295057.1:14689-14708
TTCATCCTATGTTCCAATTCAAAAGTTTCC14689TTGCCGACGTTCGTGATGCTACAAGTAAACATGGTCTGGTTGATTTGCAA
Malus domestica cultivar GMAL 2473 clone BAC 32A4 Rvi15 scab resistance gene locus, partial sequence.
KF055410.1:7329-7348
TTCATCCTATGTTCCAATTCAAAAGTTTCC7329TTGCCGACGTTCGTGATGCTACAAGTAAACATGGTCTGGTTGATTTGCAA
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:33825305-33825324
TTCATCCTATGTTCCAATTCAAAAGTTTCC33825305TTGCCGACGTTCGTGATGCTACAAGTAAACATGGTCTGGTTGATTTGCAA
Streptomyces sp. 1H-SSA4 genome.
CP022161.1:9668065-9668084
CAGCCGCGCGGGGCGGCCGCCGTGCAGAAG9668065TTGCCGACGTTCGTGATGCTCTCGCCGAGAACATTGACCGTCGGGGCGAT
Spirosoma sp. KCTC 42546 chromosome, complete genome.
CP041360.1:5845553-5845572
TGCCCAACGGCTGGAGTTTCCGCGTGCCCA5845553TTGCCGACGTTCGTGATGCTAGTGGGCAGAGTCTGGAAGGTATTGGCATC
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:2899219-2899238
TTGCAAATCAACCAGACCATGTTTACTTGT2899219AGCATCACGAACGTCGGCAAGGAAACTTTTGAATTGGAACATAGGATGAA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:3170249-3170268
TTGCAAATCAACCAGACCATGTTTACTTGT3170249AGCATCACGAACGTCGGCAAGGAAACTTTTGAATTGGAACATAGGATGAA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:1690833-1690852
TTGCAAATAAACCAAATCATGTTTACTTGT1690833AGCATCACGAACGTCGGCAAGGAAACTTTTGCATTCAAACTGAAGATGAA
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:3185148-3185167
TTGCAAATCAACCAGACCATGTTTACTTGT3185148AGCATCACGAACGTCGGCAAGGAAACTTTTGAATTGGAACATAGGATGAA
Malus domestica genome assembly, chromosome: 2.
OU696678.1:3170185-3170204
TTGCAAATCAACCAGACCATGTTTACTTGT3170185AGCATCACGAACGTCGGCAAGGAAACTTTTGAATTGGAACATAGGATGAA
Malus domestica genome assembly, chromosome: 2.
OU744954.1:3448150-3448169
TTGCAAATCAACCAGACCATGTTTACTTGT3448150AGCATCACGAACGTCGGCAAGGAAACTTTTGAATTGGAACATAGGATGAA
Malus domestica genome assembly, chromosome: 2.
OU744992.1:3170094-3170113
TTGCAAATCAACCAGACCATGTTTACTTGT3170094AGCATCACGAACGTCGGCAAGGAAACTTTTGAATTGGAACATAGGATGAA
Rosa rugosa genome assembly, chromosome: 7.
OY288197.1:12199534-12199553
TGAAGGAGCATAGGTTAACACCCGTCCGAC12199534AGCATCACGAACGTCGGCAAGGCAAGCCCGAGTCAACGCCGGAGCACCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGCCGACGTTCGTGATGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGCCGACGTTCGTGATGCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.157 | 0.149 | search_plus_done; http://172.18.8.135:50400/match?q=TTGCCGACGTTCGTGATGCT&k=0&no_gap=0&offset=0&limit=50
0.266 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=AGCATCACGAACGTCGGCAA&k=0&no_gap=0&offset=0&limit=41
0.272 | 0.005 | cgi_end;

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