GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 07:35:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Arachis hypogaea cultivar Shitouqi chromosome A05.
CP030987.1:104700067-104700086
ACAAGTTTTATTATGTCCTGTTCCCAGCTT104700067TTGCCTCTTTCTTCTTGTCCCAGCTTTGCTATTAAAAGAACTTGTTCGTC
Gossypium herbaceum isolate Zhongcao1 chromosome 7.
CP106693.1:11257252-11257271
TTGTCTTTGTGGTGATGCAGGCTCCGATGT11257252TTGCCTCTTTCTTCTTGTCCTAGGCTTACTGTCCACTGACTCTTTGTAAG
Gossypium herbaceum isolate Zhongcao1 chromosome 7.
CP106693.1:36817620-36817639
TTGTCTTTGTGGTGATGCAGGCTCTGATGT36817620TTGCCTCTTTCTTCTTGTCCTAGGCTTACTGTCCACTAACTCTTTGTAAG
Sorghum bicolor cultivar Hongyingzi chromosome 8.
CP137832.1:33526169-33526188
AAACAAAGAAGCTCCTATTCAAATATACCT33526169TTGCCTCTTTCTTCTTGTCCAAACCTGAGCACTTGATCACCCTGGTTCCA
Sorghum bicolor cultivar Huandiaonuo chromosome 8.
CP137842.1:33455039-33455058
AAACAAAGAAGCTCCTATTCAAATATACCT33455039TTGCCTCTTTCTTCTTGTCCAAACCTGAGCACTTGATCACCCTGGTTCCA
Ailanthus altissima genome assembly, chromosome: 15.
OX327697.1:18261275-18261294
TATAACTATCCTCATAAGTTAAAGCAACAT18261275TTGCCTCTTTCTTCTTGTCCTTGGCTTTCTTTTAGGACTGAGTCTAATTC
Lathyrus sativus genome assembly, chromosome: 1.
OZ012735.1:645655953-645655972
TTGATTTCCTCTCAAACCCTTGTCCTCACT645655953TTGCCTCTTTCTTCTTGTCCCAAAATAATACGTATTGACCAATCTTAGGT
Diaperis boleti genome assembly, chromosome: 2.
OY757244.1:73442590-73442609
TTGGTATGTTGAGGAAGCGAGGCTTTACTG73442590TTGCCTCTTTCTTCTTGTCCAGAATACTCTCTTGTACATCTAACTGTTCC
TSA: Cannabis sativa PK19289.1_1.CasaPuKu mRNA sequence.
JP450038.1:225-244
TTCTTCTTCTTCTTTTTCTTCCGATGAAGT225GGACAAGAAGAAAGAGGCAATGGCCGAGGTAATACTGGGTCATACTCCAA
TSA: Cannabis sativa PK19289.2_1.CasaPuKu mRNA sequence.
JP481428.1:174-193
TTCTTCTTCTTCTTTTTCTTCCGATGAAGT174GGACAAGAAGAAAGAGGCAATGGCCGAGGTAATACTGGGTCATACTCCAA
SB_BBd17-D23.R SB_BBd Sorghum bicolor genomic 3', genomic survey sequence.
EI689285.1:486-505
TGGAACCAGGGTGATCAAGTGCTCAGGTTT486GGACAAGAAGAAAGAGGCAAAGGTATATTTGAATAGGAGCTTCTTTGTTT
GH_TBb112D18r Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO222219.1:113-132
CTTACAAAGAGTTAGTGGACAGTAAGCCTA113GGACAAGAAGAAAGAGGCAAACATCAGAGCCTGCATCACCACAAAGACAA
Arachis hypogaea cultivar Shitouqi chromosome B05.
CP030997.1:126269985-126270004
GACGAACGAGTTCTTTTAATAGCAAAGCTG126269985GGACAAGAAGAAAGAGGCAAAAGCTGGGAACAGTACATAATAAAACTTGT
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:120054858-120054877
GACGAACTAGTTCTTTTAATAGCAAAGCTG120054858GGACAAGAAGAAAGAGGCAAAAGCTGGGAACAGTACATAATAAAACTGGT
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:133373001-133373020
GACGAACGAGTTCTTTTAATAGCAAAGCTG133373001GGACAAGAAGAAAGAGGCAAAAGCTGGGAACAGTACATAATAAAACTTGT
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:119221619-119221638
GACGAACTAGTTCTTTTAATAGCAAAGCTG119221619GGACAAGAAGAAAGAGGCAAAAGCTGGGAACAGTACATAATAAAACTGGT
Gossypium herbaceum isolate GPA1alz chromosome 7.
CP106706.1:62723054-62723073
CTTACAAAGAGTTAGTGGACAGTAAGCCTA62723054GGACAAGAAGAAAGAGGCAAACATCAGAGCCTGCATCACCACAAAGACAA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:15156771-15156790
GTCCTTCTCCTTGTCTTTGTTTTTGTTTTA15156771GGACAAGAAGAAAGAGGCAATCAGCCAGCACTAGGTATCAATCTTCCGAT
Diaperis boleti genome assembly, chromosome: 1.
OY757242.1:47323095-47323114
CATACAAGAGAGTATTCTGGACAAAATAGT47323095GGACAAGAAGAAAGAGGCAATAGTAAAGTGGCTAAAAGGCGGAGATTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGCCTCTTTCTTCTTGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGCCTCTTTCTTCTTGTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=TTGCCTCTTTCTTCTTGTCC&k=0&no_gap=0&offset=0&limit=50
0.228 | 0.117 | search_minus_done; http://172.18.8.135:50400/match?q=GGACAAGAAGAAAGAGGCAA&k=0&no_gap=0&offset=0&limit=42
0.236 | 0.007 | cgi_end;

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