GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 11:57:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

PG07032G03 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07032G03 5', mRNA sequence.
CN848474.1:336-355
CTCTCAATTACTTGGGTTGGGCTGCTTACA336TTGCTGTCCAAGGTTGTGTCCTTACTGGGGCTTGGGTTATAGGCCATGAA
dca0_000617.z1 Siberian ginseng embryogenic cell cluster library Eleutherococcus senticosus cDNA, mRNA sequence.
JZ511835.1:322-341
CTCTCAACTACTTGGGTTGGGCCGCTTATA322TTGCTGTCCAAGGTTGTGTCCTAACGGGGGCTTGGGTTGTAGGCCATGAA
dca0_000694.z1 Siberian ginseng embryogenic cell cluster library Eleutherococcus senticosus cDNA, mRNA sequence.
JZ511887.1:322-341
CTCTCAACTACTTGGGTTGGGCCGCTTATA322TTGCTGTCCAAGGTTGTGTCCTAACGGGGGCTTGGGTTGTAGGCCATGAA
rdcb0_000286.y1 Siberian ginseng embryogenic cell cluster library Eleutherococcus senticosus cDNA, mRNA sequence.
JZ512148.1:333-352
CTCTCAACTACTTGGGTTGGGCCGCTTATA333TTGCTGTCCAAGGTTGTGTCCTAACGGGGGCTTGGGTTGTAGGCCATGAA
Daucus carota delta12-fatty acid acetylenase gene, partial cds.
AY166774.1:161-180
CTCTTAATTACTTGGGATGGGCGGCTTACA161TTGCTGTCCAAGGTTGTGTCTTAACCGGGGCTTGGGTCGTAGGCCATGAG
Tetradesmus obliquus strain DOE0152z chromosome 1b.
CP126208.1:9462822-9462841
AGCTGCTGTTCTCGTGATCAACTGCGACAC9462822TTGCTGTCCAAGGTTGTGTCGATAGCATGCAACTGTTGCATGTGCAGTTG
Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:23195164-23195183
AACTAGACCATAAGCTCTGCTACTTGCTAG23195164GACACAACCTTGGACAGCAAGTGTGCAAGTCTCTGGGCCTCAGCTTCTCC
Metarhizium brunneum strain 4556 chromosome 1, complete sequence.
CP058932.1:1084142-1084161
CGCGACTCTCCATCTCCAACTACACAAACC1084142GACACAACCTTGGACAGCAACTCTTGTGATCAAAAAAATCTAGACACAAT
Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22755253-22755272
CTCATGGCCTACGACCCAAGCCCCAGTCAA22755253GACACAACCTTGGACAGCAATGTAAGCCGCCCATCCCAAGTAATTAAGAG
Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22759324-22759343
CTCGTGGCCTACGACCCAAGCCCCGGTTAA22759324GACACAACCTTGGACAGCAATGTAAGCTGCCCAACCTAAGTAATTAAGAG
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34666540-34666559
CTCATGGCCTACGACCCAAGCCCCGGTCAA34666540GACACAACCTTGGACAGCAATGTAAGCCGCCCATCCCAAGTAATTCAGAG
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34672415-34672434
CTCGTGGCCTACGACCCAAGCCCCGGTTAA34672415GACACAACCTTGGACAGCAATGTAAGCTGCCCAGCCCAAGTAATTAATAG
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:35069041-35069060
CTCATGGCCTACGACCCAAGCCCCGGTCAA35069041GACACAACCTTGGACAGCAATGTAAGCCGCCCATCCCAAGTAATTAAGAG
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:35073099-35073118
CTCATGGCCTACGACCCAAGCCCCGGTCAA35073099GACACAACCTTGGACAGCAATGTAAGCTGCCCAGCCCAAGTAATTAAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGCTGTCCAAGGTTGTGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGCTGTCCAAGGTTGTGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.395 | 0.386 | search_plus_done; http://172.18.8.135:50400/match?q=TTGCTGTCCAAGGTTGTGTC&k=0&no_gap=0&offset=0&limit=50
0.417 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=GACACAACCTTGGACAGCAA&k=0&no_gap=0&offset=0&limit=44
0.423 | 0.005 | cgi_end;

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