GGGenome | Results

Help | Japanese

2025-04-09 14:44:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

odd88f05.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH961212.1:208-227

TTTACCACATTCTCTGCAACAAAGTTGTTG208TTGCTGTTTCATAGCCACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCT

Brassica napus genome assembly, chromosome: C03.
HG994367.1:55326440-55326459

TTTACCACATTCTCTGCAACAAAGTTGTTG55326440TTGCTGTTTCATAGCCACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCT

Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:55986288-55986307

TTTACCACATTCTCTGCAACAAAGTTGTTG55986288TTGCTGTTTCATAGCCACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCT

Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19311034-19311053

AGAAGAAGAAGAAGAAGAAGAAGAAGAGGT19311034TGGTGGCTATGAAACAGCAACAACAACTTTGTTGCAGAGAATGTGGTAAA

Lithophane leautieri genome assembly, chromosome: 25.
OX424483.1:7794389-7794408

AGAAAATATTCCTGTCTGGAAATATAGTTG7794389TGGTGGCTATGAAACAGCAACACATTCTTCTCCTTCAGGTGTCACCAACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=TTGCTGTTTCATAGCCACCA&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTGGCTATGAAACAGCAA&k=0&no_gap=0&offset=0&limit=47
0.147 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).