GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 03:10:39, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

odd88f05.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH961212.1:208-227
TTTACCACATTCTCTGCAACAAAGTTGTTG208TTGCTGTTTCATAGCCACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCT
Brassica napus cultivar Xiang5A chromosome 13.
CP151908.1:59893233-59893252
TTTACCACATTCTCTGCAACAAAGTTGTTG59893233TTGCTGTTTCATAGCCACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55326440-55326459
TTTACCACATTCTCTGCAACAAAGTTGTTG55326440TTGCTGTTTCATAGCCACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:55986288-55986307
TTTACCACATTCTCTGCAACAAAGTTGTTG55986288TTGCTGTTTCATAGCCACCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCT
Macaca fascicularis isolate 582-1 chromosome 6.
CP141356.1:34109766-34109785
TGCAGCAGCTGCTAGGGTTAGAGGTGCAGG34109766TGGTGGCTATGAAACAGCAAAACTGATGAGTGAGGGGAGGAAAAGAAGCC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19311034-19311053
AGAAGAAGAAGAAGAAGAAGAAGAAGAGGT19311034TGGTGGCTATGAAACAGCAACAACAACTTTGTTGCAGAGAATGTGGTAAA
Tragopogon pratensis genome assembly, chromosome: 1.
OZ060759.1:372875708-372875727
GAATAAAGGAGGCGGAGATGGGGTTGTTTA372875708TGGTGGCTATGAAACAGCAAGAAAAAGAGAGGTAGAAGAAGATTAAGATG
Lithophane leautieri genome assembly, chromosome: 25.
OX424483.1:7794389-7794408
AGAAAATATTCCTGTCTGGAAATATAGTTG7794389TGGTGGCTATGAAACAGCAACACATTCTTCTCCTTCAGGTGTCACCAACA
Sphaerechinus granularis genome assembly, chromosome: 19.
OZ210762.1:9130539-9130558
CGATGGCGATGATGATTATGATTGTGATGA9130539TGGTGGCTATGAAACAGCAATGACTCCAAGGATGATCATGATTATGACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGCTGTTTCATAGCCACCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGCTGTTTCATAGCCACCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.100 | search_plus_done; http://172.18.8.135:50800/match?q=TTGCTGTTTCATAGCCACCA&k=0&no_gap=0&offset=0&limit=50
0.130 | 0.020 | search_minus_done; http://172.18.8.135:50800/match?q=TGGTGGCTATGAAACAGCAA&k=0&no_gap=0&offset=0&limit=46
0.133 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).