GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:59:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:105164503-105164522
AGATCATGCCTCCCAGTAGTTATGATGCTC105164503TTGGAAACTCTTCTATCTCATCTAAGTAAAATGTGGATGAAACTCATCGT
Alnus glutinosa genome assembly, chromosome: 13.
OY340910.1:862843-862862
GATTGTTATAACTGATATAAAAAATAACGA862843TTGGAAACTCTTCTATCTCACAATCATTTTCATGAATTGAGTGTAAAATT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737430.1:61533931-61533950
ATCACATCCGTCAACACGTAACCAGAGATC61533931TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737463.1:46699183-46699202
ATCACATCTGTCAACATGTAACCAGAGATC46699183TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737477.1:45921741-45921760
ATCACATCCGTCAACACGTAACCAGAGATC45921741TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737492.1:43531446-43531465
ATCACATCTGTCAACATGTAACCAGAGATC43531446TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737506.1:42048361-42048380
ATCACATCCGTCAACACGTAACCAGAGATC42048361TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737513.1:46624581-46624600
ATCACATCCGTCAACACGTAACCAGAGATC46624581TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737521.1:56082205-56082224
ATCACATCCGTCAACACGTAACCAGAGATC56082205TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737528.1:53333541-53333560
ATCACATCCGTCAACACGTAACCAGGGATC53333541TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737535.1:50998944-50998963
ATCACATCCGTCAACACGTAACCAGAGATC50998944TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737542.1:54803825-54803844
ATCACATCCGTCAACACGTAACCAGGGATC54803825TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737614.1:50617285-50617304
ATCACATCCGTCAACACGTAACCAGAGATC50617285TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737621.1:53657450-53657469
ATCACATCCGTCAACACGTAACCAGAGATC53657450TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737628.1:51641744-51641763
ATCACATCCGTCAACACGTAACCAGAGATC51641744TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737635.1:53985256-53985275
ATCACATCCGTCAACACGTAACCAGAGATC53985256TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737643.1:40378009-40378028
ATCACATCCGTCAACACGTAACCAGAGATC40378009TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737650.1:46565283-46565302
ATCACATCTGTCAACATGTAACCAGAGATC46565283TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737869.1:46523470-46523489
ATCACATCCGTCAACACGTAACCAGAGATC46523470TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737876.1:43222941-43222960
ATCACATCCGTCAACACGTAACCAGAGATC43222941TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737883.1:42037467-42037486
ATCACATCCGTCAACACGTAACCAGAGATC42037467TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737890.1:39880673-39880692
ATCACATCCGTCAACACGTAACCAGAGATC39880673TTGGAAACTCTTCTATCTCAAACCCTCGAAAACACAACGATACTAAGTAT
Myotis daubentonii genome assembly, chromosome: 2.
OY725360.1:122353199-122353218
TTTAAAACATTTAGAATGCTCTTATGACTG122353199TGAGATAGAAGAGTTTCCAAGAAGGGACTTAAAAAAATGCATAAGCCATA
Acanthopagrus latus isolate v.2019 genome assembly, chromosome: 6.
LR884465.1:25870007-25870026
TTCGTTATGACCTATTAATAACTCTGGTCA25870007TGAGATAGAAGAGTTTCCAAAGCTTCCACACACCCTGCGTGTTAATCTAA
A05_69-52_01.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoides cDNA, mRNA sequence.
CX174749.1:365-384
ACATCCAGAAAGTGTCAACTTTACCATATT365TGAGATAGAAGAGTTTCCAAGCCAGCCTGGAAACGTTGTACCCCCGTAAC
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:147914013-147914032
ACGATGAGTTTCATCCACATTTTACTTAGA147914013TGAGATAGAAGAGTTTCCAAGAGCATCATAACTACTGGGAGGCATGATCT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737380.1:56020367-56020386
ATACTTAGTATCGTTGTGTTTTTGAGGGTT56020367TGAGATAGAAGAGTTTCCAAGATCTCTGGTTACGTGTTGACGGATGTGAT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737387.1:55596012-55596031
ATACTTAGTATCGTTGTGTTTTTGAGGGTT55596012TGAGATAGAAGAGTTTCCAAGATCTCTGGTTACGTGTTGACGGATGTGAT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737437.1:51231620-51231639
ATACTTAGTATCGTTGTGTTTTTGAGGGTT51231620TGAGATAGAAGAGTTTCCAAGATCTCTGGTTACGTGTTGACGGATGTGAT
Polyommatus icarus genome assembly, chromosome: 17.
OW569337.1:12103323-12103342
AAGAAATAAAATTGAAACACACCAACGGAT12103323TGAGATAGAAGAGTTTCCAATAGAGATGCCTGTACTACAAACTACTGTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGAAACTCTTCTATCTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGAAACTCTTCTATCTCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.164 | 0.155 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGAAACTCTTCTATCTCA&k=0&no_gap=0&offset=0&limit=50
0.320 | 0.157 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGATAGAAGAGTTTCCAA&k=0&no_gap=0&offset=0&limit=28
0.326 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).