GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:10:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Canis lupus genome assembly, chromosome: 14.
HG994400.1:5190543-5190563
GCTTACCATAGTTTGAAACAACTCATGATT5190543TTGGAGACTCAAAAACAATTTGTTATAGTTTAGACCTTATAAAAAATAAAG
Meles meles genome assembly, chromosome: 10.
OV277451.1:33598481-33598501
GTTTACAATACTCTGAAACAACTCATGATT33598481TTGGAGACTCAAAAACAATTTGTTATAATTTACACTTTATAAAAACCCAAA
Canis lupus familiaris chromosome 14 clone 371_A_5 map 14, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC188641.13:107907-107927
GCTTACCATAGTTTGAAACAACTCATGATT107907TTGGAGACTCAAAAACAATTTGTTATAGTTTAGACCTTATAAAAAATAAAG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6648608-6648628
TTTAAAAAAATTGAAGTGCAAAATAAATCT6648608TTGGAGACTCAAAAACAATTTATTTTTATTTTCATTGGTACAGTTTACTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6893533-6893553
TTTAAAAAAATTGAAGTACAAAATAAATTT6893533TTGGAGACTCAAAAACAATTTATTTTTATTTTCATTGGTACAGTTTTACTC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6321064-6321084
TTTTAAAAAATTGAAGTACAAAATAAATTT6321064TTGGAGACTCAAAAACAATTTATTTTTATTTTCATTGGTACAGTTTACTCT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6810079-6810099
TTTAAAAAAATTGAAGTACAAAATAAATTT6810079TTGGAGACTCAAAAACAATTTATTTTTATTTTCATTGGTACAGTTTACTCT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6604440-6604460
TTTAAAAAAATTGAAGTACAAAATAAATTT6604440TTGGAGACTCAAAAACAATTTATTTTTATTTTCATTGGTACAGTTTTACTC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5360606-5360626
TTTAAAAAAATTGAAGTACAAAATAAATTT5360606TTGGAGACTCAAAAACAATTTGTTTTTATTTTCATTGGTACAGTTTTATTC
Anaspis maculata genome assembly, chromosome: 2.
OX421962.1:1552556-1552576
CCAAAACAGACCTGGTACTAAAATTTGATT1552556TTGGAGACTCAAAAACAATTTCCAGGGGCTACTTGATGCTAGAACTTGATT
Canis lupus familiaris clone RP81-386E20, complete sequence.
AC090032.2:144482-144502
CTTTATTTTTTATAAGGTCTAAACTATAAC144482AAATTGTTTTTGAGTCTCCAAAATCATGAGTTGTTTCAAACTATGGTAAGC
Canis lupus familiaris breed Labrador retriever chromosome 14a.
CP050589.1:57734954-57734974
CTTTATTTTTTATAAGGTCTAAACTATAAC57734954AAATTGTTTTTGAGTCTCCAAAATCATGAGTTGTTTCAAACTATGGTAAGC
Canis lupus familiaris breed Labrador retriever chromosome 14b.
CP050623.1:57733589-57733609
CTTTATTTTTTATAAGGTCTAAACTATAAC57733589AAATTGTTTTTGAGTCTCCAAAATCATGAGTTGTTTCAAACTATGGTAAGC
Lutra lutra genome assembly, chromosome: 11.
LR738413.1:75477372-75477392
TTTGGGTTTTTATAAAGTCTAAATTATAAC75477372AAATTGTTTTTGAGTCTCCAAAATCATGAGTTGTTTCAGAGTATTGTAAAC
Martes martes genome assembly, chromosome: 11.
OY734074.1:75595400-75595420
TTTGGGTTTTTATAAAGTCTAAATTATAAC75595400AAATTGTTTTTGAGTCTCCAAAATCATGAGTTGTTTCAGAGTATTGTAAAC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39936559-39936579
GAGTAAAACTGTACCAATGAAAATAAAAAT39936559AAATTGTTTTTGAGTCTCCAAAAATTTATTTTGTACTTCAATTTTTTTAAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36655497-36655517
GAGTAAAACTGTACCAATGAAAATAAAAAT36655497AAATTGTTTTTGAGTCTCCAAAAATTTATTTTGTACTTCAATTTTTAAAAA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40234395-40234415
GAGTAAAACTGTACCAATGAAAATAAAAAT40234395AAATTGTTTTTGAGTCTCCAAAAATTTATTTTGTACTTCAATTTTTTTAAA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39525590-39525610
GAGTAAAACTGTACCAATGAAAATAAAAAT39525590AAATTGTTTTTGAGTCTCCAAAAATTTATTTTGTACTTCAATTTTTTTAAA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39084144-39084164
GAGTAAAACTGTACCAATGAAAATAAAAAT39084144AAATTGTTTTTGAGTCTCCAAAAATTTATTTTGTACTTCAATTTTTTTAAA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39546649-39546669
GAGTAAAACTGTACCAATGAAAATAAAAAT39546649AAATTGTTTTTGAGTCTCCAAAAATTTATTTTGTACTTCAATTTTTTTAAA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40385295-40385315
GAGTAAAACTGTACCAATGAAAATAAAAAT40385295AAATTGTTTTTGAGTCTCCAAAAATTTATTTTGTACTTCAATTTTTTTAAA
Volucella bombylans genome assembly, chromosome: 4.
OX422143.1:24754539-24754559
ATCAATTTAACTGCCTTTTCACAGAAGCCA24754539AAATTGTTTTTGAGTCTCCAAAACCAAATTATACGCTTCACTTTATCAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGAGACTCAAAAACAATTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGAGACTCAAAAACAATTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGAGACTCAAAAACAATTT&k=0&no_gap=0&offset=0&limit=50
0.293 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=AAATTGTTTTTGAGTCTCCAA&k=0&no_gap=0&offset=0&limit=40
0.301 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).