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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:38:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus domestica genome assembly, chromosome: 11.
OU696687.1:32218369-32218392
AAGGGAATGACCCGTTTGTATTTCATTTTC32218369TTGGAGGTCAAGCATAAAATAGGCGTGGATCAATTCTTTTACTTGGAGGTCAAG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:32817693-32817716
AAGGGAATGACCCGTTTGTATTTCATTTTC32817693TTGGAGGTCAAGCATAAAATAGGCGTGGATCAATTCTTTTACTTGGAGGTCAAG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:9833350-9833373
AAGGGAATGACCCGTTTGTATTTCATTTTC9833350TTGGAGGTCAAGCATAAAATAGGCGTGGATCAATTCTTTTACTTGGAGGTCAAG
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:9639277-9639300
AAGGGAATGACCTGTTTGTATTTCATTTTC9639277TTGGAGGTCAAGCATAAAATAGGCGTTGATCAATTCTTTTTCTTGGAGGTCAAG
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:7161423-7161446
AAGGGAATGACCCGTTTGTATTTCATTTAC7161423TTGGAGGTCAAGCATAAAATAGGCGTTGATCAATTCTTTTTCGTGGAGGTCAAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:31653283-31653306
CTTGACCTCCAAGTAAAAGAATTGATCTAC31653283GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACCAACGGGTCATTCCCTT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:31652689-31652712
CTTGACCTCCAAGTAAAAGAATTGATCCAC31652689GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACAAACGGGCCATTCCCTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:31941933-31941956
CTTGACCTCCAAGTAAAAGAATTGATCTAC31941933GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACCAACGGGTCATTCCCTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:33062360-33062383
CTTGACCTCCAAGTAAAAGAATTGATCTAC33062360GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACCAACGGGTCATTCCCTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:31778750-31778773
CTTGACCTCCAAGTAAAAGAATTGATCCAC31778750GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACAAACGGGTCATTCCCTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:30460148-30460171
CTTGACCTCCAAGTAAAAGAATTGATCAAC30460148GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACAAACGGGTCATTCCCTT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:31482913-31482936
CTTGACCTCCAAGTAAAAGAATTGATCCAC31482913GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACAAACGGGTCATTCCCTT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:31614810-31614833
CTTGACCTCCAAGTAAAAGAATTGATCCAC31614810GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACAAACGGGCCATTCCCTT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:31122921-31122944
CTTGACCTCCAAGTAAAAGAATTGATCCAC31122921GCCTATTTTATGCTTGACCTCCAAGAAAATGAAATACAAACGGGCCATTCCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGAGGTCAAGCATAAAATAGGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGAGGTCAAGCATAAAATAGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.336 | 0.327 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGAGGTCAAGCATAAAATAGGC&k=0&no_gap=0&offset=0&limit=50
0.426 | 0.091 | search_minus_done; http://172.18.8.135:50400/match?q=GCCTATTTTATGCTTGACCTCCAA&k=0&no_gap=0&offset=0&limit=45
0.432 | 0.006 | cgi_end;

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