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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 03:31:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR4EA31TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925121.1:634-653
ATTTACCCAGCTTGTCGATGCAATAACATC634TTGGATGGCGTCAAATATGGGTCCAAAACTTCTGAGATCATAATGTTGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp180149_c0_seq1.
LA335457.1:207-226
AGAGGAAAAACAAATAATAGATTTTACCTT207TTGGATGGCGTCAAATATGGG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq1.
LA676341.1:1651-1670
CCCACTATATGGCCGAGCCCCAGTTGTCTT1651TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq2.
LA676342.1:2161-2180
CCCACTATATGGCCGAGCCCCAGTTGTCTT2161TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq3.
LA676343.1:1364-1383
CCCACTATATGGCCGAGCCCCAGTTGTCTT1364TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq4.
LA676344.1:1698-1717
CCCACTATATGGCCGAGCCCCAGTTGTCTT1698TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq8.
LA676347.1:1468-1487
CCCACTATATGGCCGAGCCCCAGTTGTCTT1468TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq10.
LA676349.1:2161-2180
CCCACTATATGGCCGAGCCCCAGTTGTCTT2161TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq11.
LA676350.1:1698-1717
CCCACTATATGGCCGAGCCCCAGTTGTCTT1698TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq12.
LA676351.1:1777-1796
CCCACTATATGGCCGAGCCCCAGTTGTCTT1777TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq13.
LA676352.1:1594-1613
CCCACTATATGGCCGAGCCCCAGTTGTCTT1594TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq14.
LA676353.1:2114-2133
CCCACTATATGGCCGAGCCCCAGTTGTCTT2114TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq15.
LA676354.1:1651-1670
CCCACTATATGGCCGAGCCCCAGTTGTCTT1651TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq16.
LA676355.1:1651-1670
CCCACTATATGGCCGAGCCCCAGTTGTCTT1651TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq17.
LA676356.1:2114-2133
CCCACTATATGGCCGAGCCCCAGTTGTCTT2114TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq20.
LA676358.1:1931-1950
CCCACTATATGGCCGAGCCCCAGTTGTCTT1931TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq21.
LA676359.1:2344-2363
CCCACTATATGGCCGAGCCCCAGTTGTCTT2344TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq23.
LA676360.1:1881-1900
CCCACTATATGGCCGAGCCCCAGTTGTCTT1881TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq27.
LA676362.1:1931-1950
CCCACTATATGGCCGAGCCCCAGTTGTCTT1931TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq29.
LA676364.1:1364-1383
CCCACTATATGGCCGAGCCCCAGTTGTCTT1364TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq33.
LA676368.1:1931-1950
CCCACTATATGGCCGAGCCCCAGTTGTCTT1931TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq34.
LA676369.1:2344-2363
CCCACTATATGGCCGAGCCCCAGTTGTCTT2344TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq35.
LA676370.1:1468-1487
CCCACTATATGGCCGAGCCCCAGTTGTCTT1468TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq37.
LA676372.1:1777-1796
CCCACTATATGGCCGAGCCCCAGTTGTCTT1777TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq39.
LA676373.1:2161-2180
CCCACTATATGGCCGAGCCCCAGTTGTCTT2161TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq40.
LA676374.1:1364-1383
CCCACTATATGGCCGAGCCCCAGTTGTCTT1364TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq41.
LA676375.1:1468-1487
CCCACTATATGGCCGAGCCCCAGTTGTCTT1468TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq44.
LA676376.1:1881-1900
CCCACTATATGGCCGAGCCCCAGTTGTCTT1881TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq46.
LA676377.1:1881-1900
CCCACTATATGGCCGAGCCCCAGTTGTCTT1881TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq48.
LA676379.1:1594-1613
CCCACTATATGGCCGAGCCCCAGTTGTCTT1594TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq49.
LA676380.1:2344-2363
CCCACTATATGGCCGAGCCCCAGTTGTCTT2344TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq50.
LA676381.1:2114-2133
CCCACTATATGGCCGAGCCCCAGTTGTCTT2114TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq51.
LA676382.1:1594-1613
CCCACTATATGGCCGAGCCCCAGTTGTCTT1594TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq52.
LA676383.1:1777-1796
CCCACTATATGGCCGAGCCCCAGTTGTCTT1777TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296306_c1_seq53.
LA676384.1:1698-1717
CCCACTATATGGCCGAGCCCCAGTTGTCTT1698TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
Lu_BamHI_13435 Linum usitatissimum BamHI library Linum usitatissimum genomic clone FLXb1446C09 5', genomic survey sequence.
HR765689.1:23-42
AATGAACAGTTTCAGAAGGATA23TTGGATGGCGTCAAATATGGGCATTGATGTACCCCCTAAGGTACGCATCC
Linum usitatissimum chromosome Lu9.
CP027633.1:19395371-19395390
AGGGATCCAATGAACAGTTTCAGAAGGATA19395371TTGGATGGCGTCAAATATGGGCATTGATGTACCCCCTAAGGTACGCATCC
Arabidopsis thaliana genome assembly, chromosome: 5.
LR699754.1:19457774-19457793
TCTTGCTCAGCTTGTCGATGCAACCACTGC19457774TTGGATGGCGTCAAATATGGGTCCAAAACTTCTGAGACCATAATGTTTTC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:42223338-42223357
TCTTGCCCAGCTCGTGGATGCAATCACATC42223338TTGGATGGCGTCAAATATGGGTCCAAAACTTCTGAGATGATAATGTTGTT
Arabidopsis thaliana cultivar Sha thalianol gene cluster, complete sequence.
MT223962.1:66750-66769
TCTTGCTCAGCTTGTCGATGCAACCACTGC66750TTGGATGGCGTCAAATATGGGTCCAAAACTTCTGAGACCATAATGTTTTC
Arabidopsis thaliana genome assembly, chromosome: 5.
OX291670.1:25608242-25608261
TCTTGCTCAGCTTGTCGATGCAACCACTGC25608242TTGGATGGCGTCAAATATGGGTCTAAAACTTCTGAGACCATAATGTTTTC
Humulus lupulus genome assembly, chromosome: 3.
OY720649.1:267802941-267802960
AGAGGAAAAACACATAATAGATTTTACCTT267802941TTGGATGGCGTCAAATATGGGTAAGAACACATCAGTATCATAATTGCTCA
RR3AI51JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV544724.1:134-153
AACAACATTATCATCTCAGAAGTTTTGGCC134CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGTAAGA
RS3A369TR RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW735922.1:123-142
AACAACATTATCATCTCAAAAGTTTTGGAC123CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
RS3A369JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW736225.1:123-142
AACAACATTATCATCTCAGAAGTTTTGGAC123CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
RS3AH77JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW736806.1:116-135
AACAACATTATCATCTCAGAAGTTTTGGAC116CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
RR3D940JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY909849.1:153-172
AACAACATTATCATCTCAGAAGTTTTGGAC153CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
RR3E310JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY911912.1:181-200
AACAACATTATGATCTCAGAAGTTTTGGAC181CCATATTTGACGCCATCCAAGATGTTATTGCATCGACAAGCTGGGTAAAA
RR4EA31JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY920665.1:177-196
AACAACATTATGATCTCAGAAGTTTTGGAC177CCATATTTGACGCCATCCAAGATGTTATTGCATCGACAAGCTGGGTAAAT
RS2E231JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY935878.1:100-119
AACAACATTATCATCTCAGAAGTTTTGGAC100CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_7037.
FX659129.1:122-141
AACAACATTATCATCTCAGAAGTTTTGGAC122CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11630.
FX757354.1:72-91
AACAACATTATCATCTCAGAAGTTTTGGAC72CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
TSA: Raphanus sativus RS08337 mRNA sequence.
JT792884.1:71-90
AACAACATTATCATCTCAGAAGTTTTGGAC71CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
TSA: Raphanus sativus RS08338 mRNA sequence.
JT792885.1:71-90
AACAACATTATCATCTCAGAAGTTTTGGAC71CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
Chenopodium album genome assembly, chromosome: 1.
OX419208.1:25024050-25024069
GGTCACTCTCATCAAACTCTACAAAGGAAC25024050CCATATTTGACGCCATCCAAATTGCCATTGACTTAGTTCTCTTGTTAAGC
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:11427163-11427182
AACAACATTATCATCTCAGAAGTTTTGGAC11427163CCATATTTGACGCCATCCAAGATGTGATTGCATCCACGAGCTGGGCAAGA
Glyphotaelius pellucidus genome assembly, chromosome: 8.
OW386545.1:27426944-27426963
TGGCTATCCCTTTACTTAGGCTTCCAAATT27426944CCATATTTGACGCCATCCAAATGTCGAAGCGAATTTATTCATATTCTTGT

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