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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 05:21:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Capsicum annuum CM_MegaContig_24703 mRNA sequence.
JW103956.1:1384-1403
CTCCAAGATTTAATATGTATGGGAATGAAT1384TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACATAAGTTT
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:243050662-243050681
CTCCAAGATTTAATATGTATGGGAATGAAT243050662TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACATAAGTTT
Solanum lycopersicum Micro-Tom DNA, chromosome 4, draft genome sequence.
AP028938.1:65176667-65176686
CTCCAAGATTTGATATGTATGGTAATGAAT65176667TTGGATTGGGAAAAGGAGTGGCACTAAGAAGTGGATATGCACATAAGTTT
Solanum lycopersicum cultivar I-3 chromosome 4.
CP023760.1:63365816-63365835
CTCCAAGATTTGATATGTATGGTAATGAAT63365816TTGGATTGGGAAAAGGAGTGGCACTAAGAAGTGGATATGCACATAAGTTT
Solanum tuberosum cultivar P8 chromosome 4.
CP046685.1:67921997-67922016
CTCCAAGATTTGATATGTATGGGAATGAAT67921997TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACAYAAGTTT
Solanum tuberosum cultivar MSH/14-112 chromosome 4.
CP046699.1:67915990-67916009
CTCCAAGATTTGATATGTATGGGAATGAAT67915990TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACAYAAGTTT
Solanum pinnatisectum cultivar CGN17745 chromosome 4.
CP047561.1:67895774-67895793
CTCCAAGATTTGATATGTATGGGAATGAAT67895774TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACACAAGTTT
Solanum tuberosum cultivar Solyntus chromosome 4.
CP055237.1:68012153-68012172
CTCCAAGATTTGATATGTATGGGAATGAAT68012153TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCTCATAAGTTT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 5.
CP124715.1:5987584-5987603
CTCCAAGATTTAATATGTATGGGAATGAAT5987584TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACACAAGTTT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 2.
CP124718.1:116144563-116144582
CTCCAAGATTTAATATGTATGGGAATGAAT116144563TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACATAAGTTT
Solanum verrucosum cultivar 11H23 chromosome 4.
CP133615.1:61667031-61667050
CTCCAAGATTTGATATGTATGGGAATGAAT61667031TTGGATTGGGAAAAGGAGTGGCACTTAGAAGTGGATATGCACACAAGTTT
Solanum pennellii chromosome ch04, complete genome.
HG975443.1:73853274-73853293
CTCCAAGATTTGATATGTATGGTAATGAAT73853274TTGGATTGGGAAAAGGAGTGGCACTAAGAAGTGGATATGCACATAAGTTT
Solanum lycopersicum chromosome ch04, complete genome.
HG975516.1:60958840-60958859
CTCCAAGATTTGATATGTATGGTAATGAAT60958840TTGGATTGGGAAAAGGAGTGGCACTAAGAAGTGGATATGCACATAAGTTT
Solanum lycopersicum genome assembly, chromosome: 4.
OU640347.1:64549487-64549506
CTCCAAGATTTGATATGTATGGTAATGAAT64549487TTGGATTGGGAAAAGGAGTGGCACTAAGAAGTGGATATGCACATAAGTTT
EST258402 tomato susceptible, Cornell Solanum lycopersicum cDNA clone cLES2C6, mRNA sequence.
AI777523.1:235-254
AAACTTATGTGCATATCCACTTCTTAGTGC235CACTCCTTTTCCCAATCCAAATTCATTACCATACATATCAAATCTTGGAG
91520.1 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 91520 5', mRNA sequence.
DN590568.1:268-287
AAACTTGTGTGCATATCCACTTCTAAGTGC268CACTCCTTTTCCCAATCCAAATTCATTCCCATACATATCAAATCTTGGAG
KS24058C10 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123264.1:430-449
AAACTTATGTGCATATCCACTTCTAAGTGC430CACTCCTTTTCCCAATCCAAATTCATTCCCATACATATTAAATCTTGGAG
TSA: Capsicum annuum MA_MegaContig_19975, mRNA sequence.
JW158740.1:443-462
AAACTTATGTGCATATCCACTTCTAAGTGC443CACTCCTTTTCCCAATCCAAATTCATTCCCATACATATTAAATCTTGGAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 5.
CP124715.1:5989107-5989126
AAACTTATGTGCATATCCACTTCTAAGTGC5989107CACTCCTTTTCCCAATCCAAATTCATTCCCATACATATTAAATCTTGGAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 5.
CP124715.1:5992981-5993000
AAACTTATGTGCATATCCACTTCTAAGTGC5992981CACTCCTTTTCCCAATCCAAATTCATTCCCATACATATTAAATCTTGGTG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:10168497-10168516
AAACTTATGTGCATATCCACTTCTAAGTGC10168497CACTCCTTTTCCCAATCCAAATTCATTCCCATACATATTAAATCTTGGAG
Solanum dulcamara genome assembly, chromosome: 9.
OX359260.1:4327329-4327348
AAACTTATGTGCATATCCACTTCTAAGTGC4327329CACTCCTTTTCCCAATCCAAATTCATTCCCATACATATCAAATCTTGGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGATTGGGAAAAGGAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGATTGGGAAAAGGAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.372 | 0.363 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGATTGGGAAAAGGAGTG&k=0&no_gap=0&offset=0&limit=50
0.620 | 0.249 | search_minus_done; http://172.18.8.135:50400/match?q=CACTCCTTTTCCCAATCCAA&k=0&no_gap=0&offset=0&limit=36
0.625 | 0.005 | cgi_end;

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