GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 15:09:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus castaneus genome assembly, chromosome: 6.
OW971840.1:23707002-23707019
ATACAAGTGGGTGAATAAAATTTAGAAACT23707002TTGGCAAGACAATAGGCCACCTTCCTGGTGAGAGCACAGGGGCCTGCC
Heterocephalus glaber genome assembly, chromosome: 3.
OX090943.1:70472288-70472305
ACTGCTTTTCTTGCTCCTACCAATTTCTTC70472288TTGGCAAGACAATAGGCCATCCTTTTAAATCACATATCTCATCATCTC
Heterocephalus glaber genome assembly, chromosome: 1.
OZ001066.1:71013061-71013078
ACTGCTTTTCTTGCTCCTACCAATTTCTTC71013061TTGGCAAGACAATAGGCCATCCTTTTAAATCACATATCTCATCATCTC
Heterocephalus glaber genome assembly, chromosome: 1.
OZ001109.1:70571351-70571368
ACTGCTTTTCTTGCTCCTACCAATTTCTTC70571351TTGGCAAGACAATAGGCCATCCTTTTAAATCACATATCTCATCATCTC
Echeneis naucrates genome assembly, chromosome: 9.
LR584050.1:14300544-14300561
TATTGCCACCTAAATATCAGTGTGAAAGCA14300544TTGGCAAGACAATAGGCCAAGTTATTGTCAATCAACTCTCATTAAACC
Strongylocentrotus purpuratus clone R3-11E3, WORKING DRAFT SEQUENCE, 18 unordered pieces.
AC178643.1:170927-170944
AGCTGAATCTCAACCCGACTCTAACGTCAT170927TTGGCAAGACAATAGGCCACATTAAAATGAATAAATATATACCTCAGG
Strongylocentrotus purpuratus clone R3-1109F10, WORKING DRAFT SEQUENCE, 21 unordered pieces.
AC181588.1:56798-56815
AGCTGAATCTCAACCCGATTCTAATGTCAG56798TTGGCAAGACAATAGGCCACATTAAAATGAATAAATATATACCTCAGG
Strongylocentrotus purpuratus clone R3-1039E12, WORKING DRAFT SEQUENCE, 15 unordered pieces.
AC181724.1:61597-61614
AGCTGAATCTCAACCCGACTCTAACGTCAT61597TTGGCAAGACAATAGGCCACATTCAAATGAATAAGTATATACCTCAGG
Populus trichocarpa clone POP002-A07, complete sequence.
AC212797.1:31812-31829
TTTGACATTTTTTAACCTTATCTGAACTTG31812TTGGCAAGACAATAGGCCTTTACTTTGGTGCACACTTGTGCCCTCCAA
Eustoma grandiflorum DNA, chromosome 18, draft genome sequence.
AP025057.1:21101773-21101790
ACATATTCCTTCCAAGACTGCCTTAACTTC21101773TTGGCAAGACAATAGGCCATGTGATGGCTACAAAATTTGAACAAAATC
Secale cereale genome assembly, chromosome: 2R.
LR738710.1:168201112-168201129
TTGAGGACAGCCCATACTCAAATCAAAGTT168201112TTGGCAAGACAATAGGCCCAACAGTTGATCACGAGGATCAATCGATGA
Secale cereale genome assembly, chromosome: 7R.
LR738715.1:650931698-650931715
TTGATGATAGCCCACACTCAAATCAAAGTT650931698TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATCGATGA
Triticum aestivum genome assembly, chromosome: 5B.
LR862521.1:288690685-288690702
TTGAGGATAGCCCACACTCAAACCAAAGTT288690685TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LR862542.1:288132211-288132228
TTGAGGATAGCCCACACTCAAACCAAAGTT288132211TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 7B.
LR862569.1:562686934-562686951
TTGAGGATAGCCCACACTCAAACCAAAGTT562686934TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LR865471.1:288446315-288446332
TTGAGGATAGCCCACACTCAAACCAAAGTT288446315TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LR865492.1:291244158-291244175
TTGAGGATAGCCCACACTCAAACCAAAGTT291244158TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LR865513.1:305751695-305751712
TTGAGGATAGCCCACACTCAAACCAAAGTT305751695TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LR865752.1:299467043-299467060
TTGAGGATAGCCCACACTCAAACCAAAGTT299467043TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LR877322.1:292832980-292832997
TTGAGGATAGCCCACACTCAAACCAAAGTT292832980TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LR878448.1:298064733-298064750
TTGAGGATAGCCCACACTCAAACCAAAGTT298064733TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
LS992093.1:288608179-288608196
TTGAGGATAGCCCACACTCAAACCAAAGTT288608179TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum turgidum subsp. durum genome assembly, chromosome: 5B.
LT934120.1:287909712-287909729
TTGAGGATAGCCCACACTCAAACCAAAGTT287909712TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
OU015734.1:307397271-307397288
TTGAGGATAGCCCACACTCAAACCAAAGTT307397271TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
OU343180.1:307974577-307974594
TTGAGGATAGCCCACACTCAAACCAAAGTT307974577TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
OU963885.1:288681384-288681401
TTGAGGATAGCCCACACTCAAACCAAAGTT288681384TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Triticum aestivum genome assembly, chromosome: 5B.
OX637238.1:247798494-247798511
TTGAGGATAGCCCACACTCAAACCAAAGTT247798494TTGGCAAGACAATAGGCCCAACAACTGGTCACGAGGATCAATTGATAA
Mesorhizobium loti DNA, symbiosis island, strain: NZP2037.
AP012557.1:167279-167296
TGGGTTTGAAGGCTCAAGCGCCAACGTGGG167279TTGGCAAGACAATAGGCCACTGCGGCGGCCGTATTCGCCTCGCGCTCG
Mesorhizobium loti DNA, nearly complete genome, strain: TONO.
AP017605.1:5409788-5409805
TGGGTTTGAAGGCTCAAGCGCCAACGTGGG5409788TTGGCAAGACAATAGGCCACTGCGGCGGCCGTATTCGCCTCGCGTTCG
Aminobacter sp. SS-2016 DNA, complete genome.
AP017986.1:1181354-1181371
TGGGTTTGAAGGCTCAAGCGCCAACGTGGG1181354TTGGCAAGACAATAGGCCACCGCGGCGGCCGTATTCGCCTCGCGCTCG
Mesorhizobium sp. 131-3-5 plasmid MesoLj131c2 DNA, complete genome.
AP023255.1:261645-261662
TGGGTTTGAAGGCTCAAGCGCCAACGTGGG261645TTGGCAAGACAATAGGCCACTGCGGCGGCCGTATTCGCCTCGCGCTCG
Mesorhizobium loti MAFF303099 DNA, complete genome.
BA000012.4:4804566-4804583
TGGGTTTGAAGGCTCAAGCGCCAACGTGGG4804566TTGGCAAGACAATAGGCCACTGCGGCGGCCGTATTCGCCTCGCGCTCG
Mesorhizobium huakuii strain NZP2235 chromosome, complete genome.
CP139858.1:1022788-1022805
TGGGTTTGAAGGCTCAAGCGCCAACGTGGG1022788TTGGCAAGACAATAGGCCACTGCGGCGGCCGTATTCGCCTCGCGTTCG
Microchrysa polita genome assembly, chromosome: 7.
OX454421.1:12441016-12441033
TCATATTTTGGGTATCGTATAAATCGAAAT12441016TTGGCAAGACAATAGGCCTGGAATGACTGTGCTTCATCAAAAGTAGGC
Heterocephalus glaber genome assembly, chromosome: 3.
OX090911.1:92018071-92018088
GAGATGATGAGATATGTGATTTAAAAGGAT92018071GGCCTATTGTCTTGCCAAGAAGAAATTGGTAGGAGCAAGAAAAGCAGT
Bufo bufo genome assembly, chromosome: 2.
LR991668.1:443553977-443553994
AGCCAAGTTAGGGGCTCTGGAGCAAAGATG443553977GGCCTATTGTCTTGCCAACTATGACTTCACTGTGAAATACCGGGCAGG
Eustoma grandiflorum DNA, chromosome 33, draft genome sequence.
AP025072.1:8479327-8479344
ATTTTAGAGTCAAATTTTCATCCATCACAT8479327GGCCTATTGTCTTGCCAAGGAGTTGAGGCAATCTTGGAAGGAATATGT
Sorghum bicolor cultivar Hongyingzi chromosome 10.
CP137834.1:64286140-64286157
CAAACTTAAGAAGAAAGCCCATGTAAACAC64286140GGCCTATTGTCTTGCCAATGTCTTGGGCCGAATAGGATTGTTGCAAAG
Sorghum bicolor cultivar Huandiaonuo chromosome 10.
CP137844.1:63094580-63094597
CAAACTTAAGAAGAAAGCCCATGTAAACAC63094580GGCCTATTGTCTTGCCAATGTCTTGGGCCGAATAGGATTGTTGCAAAG
Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
HG670306.1:685062917-685062934
TCATCAATTGATCCTTGTGACCAGTTGTTG685062917GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 2B.
LR862533.1:378768571-378768588
TCATCGATTGATCCTCGTGACCAGTTGTTG378768571GGCCTATTGTCTTGCCAAAACTATGATTTGAGTGTGGGCTATCCTCAA
Triticum aestivum genome assembly, chromosome: 3B.
LR862557.1:772632310-772632327
TCATCAATTGATCCTTGTGACCAGTTGTTG772632310GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
LR865507.1:738888949-738888966
TCATCAATTGATCCTTGTGACCAGTTGTTG738888949GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
LR865767.1:719625208-719625225
TCATCAATTGATCCTTGTGACCAGTTGTTG719625208GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 7B.
LR865779.1:412594620-412594637
TTATCAATTGATCCTCGTGACCAGTTGTTG412594620GGCCTATTGTCTTGCCAAAACTTTGGTTTGAGTGTGGGCTATCCTCAA
Triticum aestivum genome assembly, chromosome: 3B.
LR878442.1:734478064-734478081
TCATCAATTGATCCTTGTGACCAGTTGTTG734478064GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
LS992087.1:714951111-714951128
TCATCAATTGATCCTTGTGACCAGTTGTTG714951111GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum turgidum subsp. durum genome assembly, chromosome: 3B.
LT934116.1:726359409-726359426
TCATCAATTGATCCTTGTGACCAGTTGTTG726359409GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
OU343178.1:739545906-739545923
TCATCAATTGATCCTTGTGACCAGTTGTTG739545906GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
OU963879.1:733545600-733545617
TCATCAATTGATCCTTGTGACCAGTTGTTG733545600GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
OV100744.1:735052822-735052839
TCATCAATTGATCCTTGTGACCAGTTGTTG735052822GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
OW530317.1:735052822-735052839
TCATCAATTGATCCTTGTGACCAGTTGTTG735052822GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Triticum aestivum genome assembly, chromosome: 3B.
OX637232.1:640635657-640635674
TCATCAATTGATCCTTGTGACCAGTTGTTG640635657GGCCTATTGTCTTGCCAAAAACTTTGATTTGAGTGTGGGCTATCCCCA
Populus nigra genome assembly, chromosome: 3.
OX637674.1:252265-252282
TTGGAGGGCACCAGTGTGCGCCAAAGTAAA252265GGCCTATTGTCTTGCCAACAAGTTCAGATACAAATATCTGCAGAAAGG
Populus nigra genome assembly, chromosome: 15.
OX637686.1:166978-166995
TTGGAGGGCACAAGTGTGCACCGAAGTAAA166978GGCCTATTGTCTTGCCAACAAGTTCAGATAAGATTAAAAAATGTCAAA
Triticum timopheevii genome assembly, chromosome: 2G.
OY997264.1:373639111-373639128
TCATCGATTGATCCTCGTGACCAGTTGTTG373639111GGCCTATTGTCTTGCCAAAACTATGATTTGAGTGTGGGCTATCCTCAA
Mesorhizobium loti R7A symbiosis island; segment 3/4.
AL672114.1:30870-30887
CGAACGCGAGGCGAATACGGCCGCCGCAGT30870GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium sp. 131-2-1 DNA, complete genome.
AP023247.1:6492525-6492542
CGAGCGCGAGGCGAATACGGCCGCCGCGGT6492525GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium sp. 131-2-5 DNA, complete genome.
AP023249.1:6712329-6712346
CGAGCGCGAGGCGAATACGGCCGCCGCGGT6712329GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium sp. L-2-11 DNA, complete genome.
AP023257.1:6367953-6367970
CGAGCGCGAGGCGAATACGGCCGCCGCAAT6367953GGCCTATTGTCTTGCCAACCCACGTTGGCGCCTGAGCCTGCAAACCCA
Mesorhizobium sp. L-8-3 DNA, complete genome.
AP023262.1:7298730-7298747
CGAGCGCGAGGCGAATACGGCCGCCGCAGT7298730GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium sp. L-8-10 DNA, complete genome.
AP023263.1:7408375-7408392
CGAGCGCGAGGCGAATACGGCCGCCGCAGT7408375GGCCTATTGTCTTGCCAACCCACGTTGGCGTTTGAGCCTTCAAACCCA
Mesorhizobium loti NZP2037 chromosome, complete sequence.
CP016079.1:6719057-6719074
CGAGCGCGAGGCGAATACGGCCGCCGCAGT6719057GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium erdmanii strain NZP2014 chromosome, complete genome.
CP033361.1:6282390-6282407
CGAGCGCGAGGCGAATACGGCCGCCGCAGT6282390GGCCTATTGTCTTGCCAACCCACGTTGGCGCCTGAGCCTGCAAACCCA
Mesorhizobium sp. NZP2234 chromosome, complete genome.
CP033364.1:6483031-6483048
CGAGGGCGAGGCGAATACGACCGCCGCAGT6483031GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium sp. NZP2298 chromosome, complete genome.
CP033365.1:6917116-6917133
GGAGCGCGAGGCGAATACGGCCGCCGCAGT6917116GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium japonicum R7A chromosome, complete genome.
CP033366.1:6232431-6232448
CGAACGCGAGGCGAATACGGCCGCCGCAGT6232431GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium loti R88b chromosome, complete genome.
CP033367.1:6885658-6885675
CGAACGCGAGGCGAATACGGCCGCCGCAGT6885658GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium loti strain SU343 chromosome, complete genome.
CP033368.1:6646194-6646211
CGAGCGCGAGGCGAATACGGCCGCCGCAGT6646194GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium jarvisii strain ATCC 33669 chromosome, complete genome.
CP033507.1:6646338-6646355
CGAGCGCGAGGCGAATACGGCCGCCGCAGT6646338GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium sp. NZP2077 chromosome, complete genome.
CP051293.1:7039509-7039526
CGAGCGCGAGGCGAATACAGCCGCCGCAGT7039509GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium japonicum R7A chromosome, complete genome.
CP051772.1:6232840-6232857
CGAACGCGAGGCGAATACGGCCGCCGCAGT6232840GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium japonicum strain R7Astar chromosome, complete genome.
CP051773.1:6232840-6232857
CGAACGCGAGGCGAATACGGCCGCCGCAGT6232840GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Mesorhizobium japonicum strain R7AstarV2 chromosome, complete genome.
CP052769.1:6232833-6232850
CGAACGCGAGGCGAATACGGCCGCCGCAGT6232833GGCCTATTGTCTTGCCAACCCACGTTGGCGCTTGAGCCTTCAAACCCA
Pelagerythrobacter marinus strain E6 chromosome, complete genome.
CP098453.1:839021-839038
CGTCAGTCAGGCCGCAGGGATCGCCGGGGT839021GGCCTATTGTCTTGCCAAGTTCGCCGACCCGGACATCTGGACTGACCA
Merzomyia westermanni genome assembly, chromosome: 6.
OX465293.1:69268552-69268569
TTTGAGCATACTGGATTGATAACTGGCAAA69268552GGCCTATTGTCTTGCCAACACTCTTCAGAACCTTCGGGCATTGCTTTT
Pyrrhosoma nymphula genome assembly, chromosome: 5.
OY754331.1:43768402-43768419
CCCTCTCCTAATAGGGATTCTATCCTAGAA43768402GGCCTATTGTCTTGCCAAAAGTCGGGATGTCTCCAATGGGTAAATCCC
Sepia lycidas genome assembly, chromosome: 22.
OZ010592.1:29106139-29106156
GTGCAATACAACCAACTTAAGGAATCTACT29106139GGCCTATTGTCTTGCCAAACCGTGATGACAGACCTTTCAAATCTGTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGCAAGACAATAGGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGCAAGACAATAGGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.383 | 0.375 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGCAAGACAATAGGCC&k=0&no_gap=0&offset=0&limit=50
0.522 | 0.139 | search_minus_done; http://172.18.8.135:50400/match?q=GGCCTATTGTCTTGCCAA&k=0&no_gap=0&offset=0&limit=16
0.551 | 0.028 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).