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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 21:01:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

E2790 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E2790, mRNA sequence.
BG544792.1:85-104
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT85TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACAACCAAGAAG
BN25.060K04F011129 BN25 Brassica napus cDNA clone BN25060K04, mRNA sequence.
CD825394.1:267-286
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT267TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACAACCAAGAAG
Brassica oleracea var. viridis mRNA, clone: KALE-104I07, 5' end sequence.
DK495525.1:354-373
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT354TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACCATGAAGTTT
Brassica oleracea var. viridis mRNA, clone: KALE-120B02, 5' end sequence.
DK501464.1:451-470
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT451TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACCATGAAGTTT
Brassica oleracea var. viridis mRNA, clone: KALE-135I11, 5' end sequence.
DK507381.1:451-470
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT451TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACCATGAAGTTT
0184791 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV212970.1:143-162
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT143TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACAACCAAGAAG
BR007496 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-083B10 5', mRNA sequence.
EX022852.1:152-171
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT152TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACAACCAAGAAG
BR043807 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-054G09 5', mRNA sequence.
EX059163.1:188-207
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT188TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACAACCAAGAAG
BR046110 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-097G01 5', mRNA sequence.
EX061466.1:153-172
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT153TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACAACCAAGAAG
Raphanus sativus mRNA, clone: RSCS05L11, 5' end sequence.
FY447811.1:444-463
GAAGCTTCCTAAGAAACCTTCTACTAAGTT444TTGGGATAATGGTGAGTCCCAAGCTCCAGATAACAACAACAACAACAACC
TSA: Chorispora bungeana T_45237 mRNA sequence.
KA082067.1:558-577
GAAGCTTCCTAAGAAACCTTCTGCTAAGTT558TTGGGATAATGGTGAGTCCCAAACTGCAGATAACAACCATCAAGGCGATG
oeh39c07.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH988871.1:407-426
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT407TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACCATGAAGTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
AC189573.1:77314-77333
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT77314TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACAACCAAGAAG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:38638629-38638648
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT38638629TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACCATGAAGTCT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:41477934-41477953
GCTTCCTAAGAAACCTTCTTCTGCTAAGTT41477934TTGGGATAATGGTGAGTCCCAAGCTCCAGACAACAACAACCATGAAGTCT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:40519461-40519480
GAAGCTTCCTAAGAAACCTTCTACTAAGTT40519461TTGGGATAATGGTGAGTCCCAAGCTCCAGATAACATCAATCAAGGTGGTG
Lepidium didymum genome assembly, chromosome: 10.
OY986982.1:1428172-1428191
GAAGCTTCCTAAGAAACCTTCTGCTAAGTT1428172TTGGGATAATGGTGAGTCCCAAATTGCAGATAACAACAACCAAGGTGATG
MxOs06901B12.g ORESTES cDNA library, Eimeria maxima sporulated oocysts Eimeria maxima cDNA, mRNA sequence.
JK241713.1:258-277
CGATCCTCCAGATCCCGGCGCAGCAGCACT258GGGACTCACCATTATCCCAAGACCAGATTACAACTACAGGGCATTTGATG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_2390.
FX662233.1:1541-1560
GGTTGTTGTTGTTGTTGTTATCTGGAGCTT1541GGGACTCACCATTATCCCAAAACTTAGTAGAAGGTTTCTTAGGAAGCTTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3789.
FX700334.1:1645-1664
CTTCTTGGTTGTTGTTGTTGTCTGGAGCTT1645GGGACTCACCATTATCCCAAAACTTAGCAGAAGAAGGTTTCTTAGGAAGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_22466.
FX730281.1:1437-1456
CTTCTTGGTTGTTGTTGTTGTCTGGAGCTT1437GGGACTCACCATTATCCCAAAACTTAGCAGAAGAAGGTTTCTTAGGAAGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_15929.
FX736626.1:1534-1553
GGTTGTTGTTGTTGTTGTTATCTGGAGCTT1534GGGACTCACCATTATCCCAAAACTTAGTAGAAGGTTTCTTAGGAAGCTTC
TSA: Raphanus sativus RS08774 mRNA sequence.
JT793321.1:1398-1417
CACCACCTTGATTGATGTTATCTGGAGCTT1398GGGACTCACCATTATCCCAAAACTTAGTAGAAGGTTTCTTAGGAAGCTTC
TSA: Chorispora bungeana CK_02443 mRNA sequence.
JW990509.1:563-582
CATCGCCTTGATGGTTGTTATCTGCAGTTT563GGGACTCACCATTATCCCAAAACTTAGCAGAAGGTTTCTTAGGAAGCTTC
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:56408898-56408917
CTTCTTGGTTGTTGTTGTTGTCTGGAGCTT56408898GGGACTCACCATTATCCCAAAACTTAGCAGAAGAAGGTTTCTTAGGAAGC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:17180457-17180476
AAACTTCATGGTTGTTGTTGTCTGGAGCTT17180457GGGACTCACCATTATCCCAAAACTTAGCAGAAGAAGGTTTCTTAGGAAGC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:41374547-41374566
CTTCTTGGTTGTTGTTGTTGTCTGGAGCTT41374547GGGACTCACCATTATCCCAAAACTTAGCAGAAGAAGGTTTCTTAGGAAGC
Brassica rapa genome, scaffold: A06.
LR031569.1:51515330-51515349
CTTCTTGGTTGTTGTTGTTGTCTGGAGCTT51515330GGGACTCACCATTATCCCAAAACTTAGCAGAAGAAGGTTTCTTAGGAAGC
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:55132739-55132758
CTTCTTGGTTGTTGTTGTTGTCTGGAGCTT55132739GGGACTCACCATTATCCCAAAACTTAGCAGAAGAAGGTTTCTTAGGAAGC
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:6702380-6702399
CATCGCCTTGATTGTTGTTATCTGGAGCTT6702380GGGACTCACCATTATCCCAAAACTTAGCAGAAGGTTTCTTAGGAAGCTTC
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:13131040-13131059
CACCACCTTGATTGATGTTATCTGGAGCTT13131040GGGACTCACCATTATCCCAAAACTTAGTAGAAGGTTTCTTAGGAAGCTTC
Lepidium didymum genome assembly, chromosome: 16.
OY986988.1:15710853-15710872
CATCACCTTGGTTATTGCTATCTACAATTT15710853GGGACTCACCATTATCCCAAAACTTAGCAGAAGGTTTCTTAGGAAGCTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGGATAATGGTGAGTCCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGGATAATGGTGAGTCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.574 | 1.565 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGGATAATGGTGAGTCCC&k=0&no_gap=0&offset=0&limit=50
1.881 | 0.307 | search_minus_done; http://172.18.8.135:50400/match?q=GGGACTCACCATTATCCCAA&k=0&no_gap=0&offset=0&limit=33
1.891 | 0.010 | cgi_end;

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