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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:30:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Denticeps clupeoides genome assembly, chromosome: 2.
LR535814.1:18900228-18900247
CAGCACCTCCTCATTCGTAAAAACTTGTTT18900228TTGGGGCATTATCATGCTTTGTTGTTCAGAAACAGCAACGTTATTTGTTA
GA__Ed0046H09r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0046H09r, mRNA sequence.
BQ401993.1:257-276
CTTTAATGGTCACACTAGTAAAGGAATAAG257TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTAATCAGCGTCATT
GA__Ed0087E02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0087E02r, mRNA sequence.
BQ414496.1:260-279
CTTTAATGGTCACACTAGTAAAGGAATAAG260TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTAATCAGCGTCATT
GR__Ea22C22.f GR__Ea Gossypium raimondii cDNA clone GR__Ea22C22 5', mRNA sequence.
CO098030.1:216-235
CTTTAATGGTCACACTAGTAAAGGAATAAG216TTGGGGCATTATCATGCTTTAAAAATGAAAAGGAAGTCATCAGCGTCATT
G.h.fbr-sw02835 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493445.1:168-187
CTTTAATGGTCACACTAGTAAAGGAATAAG168TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTAATCAGCGTCATT
G.h.fbr-sw02970 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493580.1:168-187
CTTTAATGGTCACACTAGTAAAGGAATAAG168TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTAATCAGCGTCATT
G.h.fbr-sw02975 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493585.1:168-187
CTTTAATGGTCACACTAGTAAAGGAATAAG168TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTAATCAGCGTCATT
G.h.fbr-sw03000 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493610.1:168-187
CTTTAATGGTCACACTAGTAAAGGAATAAG168TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTAATCAGCGTCATT
h2_B11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO103885.1:120-139
CTTTAATGGTCACACTAGTAAAGGAATAAG120TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTCATCAGCGTCATT
A11_51744.11.S1108272874.LDYN1-11723.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ111220.1:122-141
CTTTAATGGGCACACTAGTAAAGGAATAAG122TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTCATCAGCGTCATT
Gossypium turneri isolate D10-2 chromosome D10_08.
CP032578.1:10112341-10112360
CTTTAATGGTCACACTAGTAAAGGAATAAG10112341TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTCATCAGCGTCATT
Gossypium herbaceum isolate GPA1alz chromosome 8.
CP106698.1:6122917-6122936
CTTTAATGGTCACACTAGTAAAGGAATAAG6122917TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTAATCAGCGTCATT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:123959545-123959564
CTTTAATGGTCACACTAGTAAAGAAATAAG123959545TTGGGGCATTATCATGCTTTAAGAATGAAAAGGAAGTCATCAGCGTCATT
Chamaenerion angustifolium genome assembly, chromosome: 16.
OX328280.1:28496131-28496150
TAAGGTAGCAGTACAAGATTCTTTAATAGA28496131TTGGGGCATTATCATGCTTTTAGTTGACATTTTGTTAATTTTACTAAAGT
UFL_379_02 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES830581.1:243-262
AATGACGCTGATTACTTCCTTTTCATTCTT243AAAGCATGATAATGCCCCAACTTATTCCTTTACTAGTGTGACCATTAAAG
EST003262 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 13-G22 5', mRNA sequence.
GR710062.1:774-793
AATGACGCTGATTACTTCCTTTTCATTCTT774AAAGCATGATAATGCCCCAACTTATTCCTTTACTAGTGTGACCATTAAAG
GH_TBb092C17r Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO208657.1:317-336
AATGACGCTGATTACTTCCTTTTCATTCTT317AAAGCATGATAATGCCCCAACTTATTCCTTTACTAGTGTGACCATTAAAG
Gossypioides kirkii chromosome KI_08.
CP032250.1:32761026-32761045
AATGACGCCGATGACTTCCTTTTCATTCTT32761026AAAGCATGATAATGCCCCAACTTATTCCTTTACTAGTGTGACCCTTAAAG
Gossypium raimondii isolate D5-4 chromosome D5_08.
CP032560.1:50971939-50971958
AATGACGCTGATGACTTCCTTTTCATTCTT50971939AAAGCATGATAATGCCCCAACTTATTCCTTTACTAGTGTGACCATTAAAG
Gossypium herbaceum isolate Zhongcao1 chromosome 8.
CP106683.1:123724590-123724609
AATGACGCTGATTACTTCCTTTTCATTCTT123724590AAAGCATGATAATGCCCCAACTTATTCCTTTACTAGTGTGACCATTAAAG
Lepidonotus clava genome assembly, chromosome: 11.
OW387143.1:19835889-19835908
GCAAATGGGAGAATATTAATAGACTACTCC19835889AAAGCATGATAATGCCCCAAATGCTTTGTCAATAATAAAACAAATGGTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGGGCATTATCATGCTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGGGCATTATCATGCTTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.559 | 0.550 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGGGCATTATCATGCTTT&k=0&no_gap=0&offset=0&limit=50
0.888 | 0.330 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGCATGATAATGCCCCAA&k=0&no_gap=0&offset=0&limit=36
0.893 | 0.005 | cgi_end;

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