GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 10:25:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Carassius carassius genome assembly, chromosome: 41.
OY720508.1:22837553-22837572
ATATTGAAGTATTCTTTGGGCTTCGGATCA22837553TTGGTTGAGGCAAGTTTTCAAAACAGCTTATCAGTCTGCCTAATGTAAAA
Agrotis clavis genome assembly, chromosome: 4.
OX940921.1:17335613-17335632
AGCTCCTTTTTATTATTTGAAAACTTCTCC17335613TTGGTTGAGGCAAGTTTTCAAATAATGAGGAAGGTTTCAAGTGATAAAGA
Pyrausta despicata genome assembly, chromosome: 7.
OY992851.1:5151447-5151466
CCTTGTGATACTTGGGGTGTGCGATGGCGC5151447TTGGTTGAGGCAAGTTTTCAACAGTGCTATGCATACCTTCGTATCGGATT
Cyprinus carpio genome assembly, scaffold: LG20, chromosome: 20.
LN590713.1:1682231-1682250
TTTTACATTCGGCAGACTGATTAGCGGTTT1682231TGAAAACTTGCCTCAACCAATGATCCGAAGCCCAAAGAATACTTCAATTT
Cyprinus carpio genome assembly, scaffold: LG20, chromosome: 20.
LN590713.1:1862519-1862538
TTTTACATTCGGCAGACTGATTAGCGGTTT1862519TGAAAACTTGCCTCAACCAATGATCCGAAGCCCAAAGAATACTTCAATTT
Xanthogramma pedissequum genome assembly, chromosome: 1.
OU343160.1:36900942-36900961
CAACTCTATTTATAATATATGATATAATTG36900942TGAAAACTTGCCTCAACCAAACCACATAACTTGCTACTCTGTCGCGTCAC
Xylophagus ater genome assembly, chromosome: 5.
OY730482.1:27074938-27074957
AAATTGCCTGAAAATTTCATAATAATTGCT27074938TGAAAACTTGCCTCAACCAAAAGGCGTCATCTTTCTTCTGTGAGATTCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGGTTGAGGCAAGTTTTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGTTGAGGCAAGTTTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGTTGAGGCAAGTTTTCA&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAAACTTGCCTCAACCAA&k=0&no_gap=0&offset=0&limit=47
0.171 | 0.003 | cgi_end;

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