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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 03:40:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene81494_XinShao mRNA sequence.
JR665957.1:136-159
ATTGAGCTTCTTCATTTCACAAGCTGTAGA136TTGTAAGTGATCAGTTGTGGCAGTCGTATTGGCACCAAGCACAAGCTTTGAGCA
TSA: Pyrus x bretschneideri Unigene81495_XinShao mRNA sequence.
JR665958.1:145-168
AATGAGTTTCTTCATTTCACAAGCTGTAGA145TTGTAAGTGATCAGTTGTGGCAGTCGTATTGGCACCAAGCACAAGCTTTGAGCA
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:784580-784603
ATTGAGTTTCTTCATTTCACAAGCTGTAGA784580TTGTAAGTGATCAGTTGTGGCAGTCGTCATGGCACCAAGCACAAGCTTTGAGCA
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:764372-764395
ATTGAGTTTCTTCATTCCACAAGCTGTAGA764372TTGTAAGTGATCAGTTGTGGCAGTCGTATTGGCACCAAGCACAAGCTTTGAGCA
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:813650-813673
ATTGAGTTTCTTCATTTCACAAGCTGTAGA813650TTGTAAGTGATCAGTTGTGGCAGTCGTATTGGCACCAAGCACAAGCTTTGAGCA
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33064381-33064404
TGCTCAAAGCTTGTGCTTGGTGCCATGACG33064381ACTGCCACAACTGATCACTTACAATCTACAGCTTGTGAAATGAAGAAACTCAAT
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:33948357-33948380
TGCTCAAAGCTTGTGGTTGGTGCCATGACG33948357ACTGCCACAACTGATCACTTACAATCTGCAGCTTGTGAAATGAAGAAACTCAAT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:30793459-30793482
TGCTCAAAGCTTGTGCTTGGTGCCATTACG30793459ACTGCCACAACTGATCACTTACAATCTACAGCTTGTGAAATGAAGAAATTCAAT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:30852448-30852471
TGCTCAAAGCTTGTGCTTGGTGCCAATACA30852448ACTGCCACAACTGATCACTTACAATCTACAGCTTGTGAAAGGAAGAAACTCAAT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:30976823-30976846
TGCTCAAAGCTTGTGCTTGGTGCCAATACG30976823ACTGCCACAACTGATCACTTACAAGCTACAGCTTGTGAAAAGAAACTCATTCTG
Malus domestica genome assembly, chromosome: 17.
OU696693.1:33181685-33181708
GGTTGCTCAAAGCTTGTGCTTGGTGCCACG33181685ACTGCCACAACTGATCACTTACAATCTACAGCTTGTGAAATGAAGAAACTCAAT
Malus domestica genome assembly, chromosome: 17.
OU696693.1:33236372-33236395
TGCTCAAAGCTTGTGCTTGGTACCAATACG33236372ACTGCCACAACTGATCACTTACAAGCTACAGCTTGTGAAATGAAGGAACTCAAT
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:38784982-38785005
TGCTCAAAGCTTGTGTTTGGTGCCAGTAGG38784982ACTGCCACAACTGATCACTTACAATCTACAGCTAGTGAAACGAAGAAACTCAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTAAGTGATCAGTTGTGGCAGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTAAGTGATCAGTTGTGGCAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.390 | 0.382 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTAAGTGATCAGTTGTGGCAGT&k=0&no_gap=0&offset=0&limit=50
0.506 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGCCACAACTGATCACTTACAA&k=0&no_gap=0&offset=0&limit=45
0.512 | 0.005 | cgi_end;

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