GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 00:37:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Canis lupus familiaris breed Labrador retriever chromosome Xa.
CP050576.1:101755671-101755690
CAGAACTCAATGAAATGGAGACCAGGAGTA101755671TTGTAGAACACATCAACAAAACCAGTAGTTGGTTCTTTGAAAGAATTAAT
Canis lupus familiaris breed Labrador retriever chromosome Xb.
CP050636.1:101763308-101763327
CAGAACTCAATGAAATGGAGACCAGGAGTA101763308TTGTAGAACACATCAACAAAACCAGTAGTTGGTTCTTTGAAAGAATTAAT
Canis lupus genome assembly, chromosome: X.
HG994381.1:20310280-20310299
CAGAACTCAATGAAATAGAGACCAGAAGAA20310280TTGTAGAACACATCAACAAAACCAGGAGTTGGTTCTTTGAAAGAATTAAT
Pholis gunnellus genome assembly, chromosome: 18.
OU342821.1:5719611-5719630
TACAATTATACTTTTTTTTAATATTTACTT5719611TTGTAGAACACATCAACAAACATCGACACTGCCATTATGTTATGTTTATA
Pinus pinaster root EST, clone RS49A05.
BX680822.1:106-125
ACAGCCAAAGACCAATTCTTCAGAAATCAT106TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTTCCATG
Pinus pinaster bud EST.
CT579563.1:138-157
ACAGCCAAAGACCAATTCTTCAGAAATCAT138TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
Pinus pinaster bud EST.
CT579601.1:178-197
ACAGCCAAAGACCAATTCTTCAGAAATCAT178TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
HEAT1_50_D03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_50_D03_A029 5', mRNA sequence.
DR014623.1:131-150
ACAGCCAAAGACCAATTCTTCAGAAATCAT131TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
HEAT1_52_E02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_52_E02_A029 5', mRNA sequence.
DR014962.1:102-121
ACAGCCAAAGACCAATTCTTCAGAAATCAT102TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
RTFEPL1_6_A08.g1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_6_A08_A029 5', mRNA sequence.
DR078721.1:133-152
ACAGCCAAAGACCAATTCTTCAGAAATCAT133TTGTAGAACACATCAACAAACATTCTTATGCTGGTTGGAAGGCTGCCATG
WS02814.C21_J03 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02814_J03 5, mRNA sequence.
DR484316.1:146-165
AGAGCCAAAGACCAATTCTTCAGAAATCAT146TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
WS02815.C21_J06 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02815_J06 5, mRNA sequence.
DR484600.1:157-176
AGAGCCAAAGACCAATTCTTCAGAAATCAT157TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
EST1077869 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABW55 3' end, mRNA sequence.
DR687787.1:289-308
ACAGCCAAAGACCAATTCTTCAGAAATCAT289TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
EST1083195 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWADU71 3' end, mRNA sequence.
DR693107.1:197-216
ACAGCCAAAGACCAATTCTTCAGAAATCAT197TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
EST1149409 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMG641 3' end, mRNA sequence.
DT634478.1:297-316
ACAGCCAAAGACCAATTCTTCAGAAATCAT297TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
EST1153063 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMHB49 3' end, mRNA sequence.
DT638132.1:240-259
ACAGCCAAAGACCAATTCTTCAGAAATCAT240TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
SSE00005227 Metatranscriptome of hindgut from Zootermopsis angusticollis Non-normalized termite gut metagenome cDNA, mRNA sequence.
EC190558.1:211-230
GCTTGGATGTGGGTGATCAAGAAGCTAAAG211TTGTAGAACACATCAACAAACATCTACAGAAAGTTC
SSE00001841 Metatranscriptome of hindgut from Zootermopsis angusticollis Non-normalized termite gut metagenome cDNA, mRNA sequence.
EC192895.1:42-61
GCTTGGATGTGGGTGATCAAGAAGCTAAAG42TTGTAGAACACATCAACAAACATCTACAGAAAGTTCTGAACAGTCTTCTG
ZSE00000229 hindgut material of the pacific damp-wood termite Zootermopsis Zootermopsis hindgut protist cDNA, mRNA sequence.
EG751438.1:116-135
GCTTGGATGTGGGTGATCAAGAAGCTAAAG116TTGTAGAACACATCAACAAACATCTACAGAAAGTTCTGAACAGTCTTCTG
GQ03108.B7_K17 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03108_K17 5', mRNA sequence.
EX350128.1:141-160
AGAGCCAAAGACCAATTCTTCAGAAATCAT141TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ03212.B7_F23 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03212_F23 5', mRNA sequence.
EX367099.1:151-170
AGAGCCAAAGACCGATTCTTCAGAAATCAT151TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ03222.B7_H16 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03222_H16 5', mRNA sequence.
EX371526.1:147-166
AGAGCCAAAGACCAATTCTTCAGAAATCAT147TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ03226.B7_C12 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03226_C12 5', mRNA sequence.
EX372858.1:131-150
AGAGCCAAAGACCAATTCTTCAGAAATCAT131TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ03227.B7_J14 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03227_J14 5', mRNA sequence.
EX373378.1:146-165
AGAGCCAAAGACCAATTCTTCAGAAATCAT146TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCCGCCATG
GQ03319.B7_M18 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ03319_M18 5', mRNA sequence.
EX391371.1:171-190
AGAGCCAAAGACCAATTCTTCAGAAATCAT171TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ03407.B7_F03 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03407_F03 5', mRNA sequence.
EX396330.1:141-160
AGAGCCAAAGACCAATTCTTCAGAAATCAT141TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ03408.B7_E06 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03408_E06 5', mRNA sequence.
EX396673.1:141-160
AGAGCCAAAGACCAATTCTTCAGAAATCAT141TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ03808.B7_I04 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03808_I04 5', mRNA sequence.
EX424646.1:144-163
AGAGCCAAAGACCAATTCTTCAGAAATCAT144TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
GQ04004.B7_O01 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04004_O01 5', mRNA sequence.
EX437302.1:177-196
AGAGCCAAAGACCAATTCTTCAGAAATCAT177TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
PCO0136.C21_E20 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0136_E20 5', mRNA sequence.
GT237754.1:156-175
ACAGCCAAAGACCAATTCTTCAGAAATCAT156TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
WS02756.C21_O03 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02756_O03 5', mRNA sequence.
GW714830.1:177-196
AGAGCCAAAGACCAATTCTTCAGAAATCAT177TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
WS02759.C21_L21 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02759_L21 5', mRNA sequence.
GW715680.1:174-193
AGAGCCAAAGACCAATTCTTCAGAAATCAT174TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
PBA0124.C21_A21 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0124_A21 5', mRNA sequence.
GW754246.1:157-176
ACAGCCAAAGACCAATTCTTCAGAAATCAT157TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
Pinus sylvestris EST, clone WZ0APSCA3YK01CM1.
HE624634.1:50-69
ACAGCCAAAGACCAATTCTTCAGAAATCAT50TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
Pinus sylvestris EST, clone WZ0APSBA2YC24FM1.
HE628565.1:200-219
ACAGCCAAAGACCAATTCTTCAGAAATCAT200TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
Pinus sylvestris EST, clone WZ0APSBA6YI03FM1.
HE630720.1:142-161
ACAGCCAAAGACCAATTCTTCAGAAATCAT142TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
Pinus sylvestris EST, clone WZ0APSBA7YF17FM1.
HE631150.1:142-161
ACAGCCAAAGACCAATTCTTCAGAAATCAT142TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
Pinus sylvestris EST, clone WZ0APSBA8YF16FM1.
HE631676.1:142-161
ACAGCCAAAGACCAATTCTTCAGAAATCAT142TTGTAGAACACATCAACAAACATTCAAATGCTGGTTGGAAGGCTGCCATG
TSA: Abies alba contig14694.Aaseedling mRNA sequence.
JV153337.1:125-144
AGAGCCAAAGCCCAATTCTTCAGAAATCAT125TTGTAGAACACATCAACAAACATTCAAATGCTGGATGGAAGGCTGCCATG
OM__Ba0050G02.r OM__Ba Oryza minuta genomic clone OM__Ba0050G02 3', genomic survey sequence.
CZ056624.2:18-37
CTTGTTTCCTCTTCCAC18TTGTAGAACACATCAACAAAAATGGATCGATAAATGTTTCACAAACATGA
Picea sitchensis clone WS02756_O03 unknown mRNA.
BT070857.1:150-169
AGAGCCAAAGACCAATTCTTCAGAAATCAT150TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
Picea glauca clone GQ04004_O01 mRNA sequence.
BT118306.1:177-196
AGAGCCAAAGACCAATTCTTCAGAAATCAT177TTGTAGAACACATCAACAAACATCCAAATGCTGGTTGGAAGGCTGCCATG
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:953716520-953716539
CTGTGGAAAGACACCCACCAAGAACCTTGT953716520TTGTAGAACACATCAACAAACCATCACTTTCCATTCCATGATTTCCATTG
Chloroclysta siterata genome assembly, chromosome: 2.
OW028589.1:5936089-5936108
GATGATAGAACAAAATAATGTACTACGATT5936089TTGTAGAACACATCAACAAACAATGTCGCGACAGCATATGTCTAACTATT
Agelas oroides genome assembly, chromosome: 1.
OX422183.1:29715516-29715535
GATTGACCTAGCTGTGACTTCTGGGCAGAG29715516TTGTAGAACACATCAACAAATTGAACTTTTTTGGTTTCCATGGTGATTTT
Venusia cambrica genome assembly, chromosome: 27.
OX596061.1:2245311-2245330
TGTAGTGCCAGTGTATGTGATAGTGCTTCT2245311TTGTAGAACACATCAACAAAGTGTCTCCCCTTAAATATAAACTATAAGAA
Carabus problematicus genome assembly, chromosome: 9.
OY728586.1:11852288-11852307
AGGGAAAAAATCTAACATTTATAATCAGAT11852288TTGTAGAACACATCAACAAACATAAACTGAACATATTTTACTACAGGAAA
Nudaria mundana genome assembly, chromosome: 1.
OY748287.1:1271892-1271911
TTTTCTGTGAGAATTTATGACCAAGTTTTC1271892TTGTAGAACACATCAACAAAGAAATGTATTTGTAAATCTCGCTGCAACAA
Trididemnum clinides genome assembly, chromosome: 20.
OY776303.1:10703485-10703504
CATGTCAAGATGTTTCCTGCCTTGTACAGT10703485TTGTAGAACACATCAACAAACAGTTTTGAGTCCGTCTGCTATTTGATACG
Arvicola amphibius genome assembly, chromosome: X.
LR862387.1:98803444-98803463
ACATTCCATTTTTCTGGCCAAGAGGTTCTC98803444TTTGTTGATGTGTTCTACAAAATATTCTCCCAAAAGCATACCTCTCACAT
Canis lupus familiaris breed Labrador retriever chromosome Xa.
CP050576.1:119006007-119006026
ATTAATTCTTTCAAAGAACCAACTCCTGGT119006007TTTGTTGATGTGTTCTACAATTCTTCTGGTCTCTATTTCATTGAGTTCTG
Rana temporaria genome assembly, chromosome: 4.
LR991683.1:168116396-168116415
CACCCTGAAATGTATTTTCAGCCTGACTCA168116396TTTGTTGATGTGTTCTACAAGCAACACAATACCTCATTTGACTAGTACTG
WS02814.CR_J03 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02814_J03 3, mRNA sequence.
DR478668.1:832-851
CATGGCAGCCTTCCAACCAGCATTTGGATG832TTTGTTGATGTGTTCTACAAATGATTTCTGAAGAATTGGTCTTTGGCTCT
TSA: Larix kaempferi PEMC9790.Lakaproemb mRNA sequence.
JR170508.1:559-578
CATGGAAGCCTTCCAACCAGCATTTGAATG559TTTGTTGATGTGTTCTACAAATGATTTCTGAAGAATTGGTCTTTGGCTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTAGAACACATCAACAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTAGAACACATCAACAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.555 | 2.546 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTAGAACACATCAACAAA&k=0&no_gap=0&offset=0&limit=50
2.771 | 0.216 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGTTGATGTGTTCTACAA&k=0&no_gap=0&offset=0&limit=1
2.774 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).