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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:51:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Camellia sinensis mRNA, clone: RT7G11, unspecified EST, sequenced using T7 primer, expressed in roots.
FS951913.1:20-39
CTCACACTCACAAGCCTTT20TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGGAGCTCAATCTA
EST1067 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_58.M13+_B08.ab1, mRNA sequence.
GE650740.1:32-51
ATCGGCCATTACGGCCGGGGACAAGCCTTT32TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGAGAGGAGCTCAA
EST2180 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_23_29.M13+_E04.ab1, mRNA sequence.
GE651853.1:36-55
GCCATTACGGCCGGGGACTCACAAGCCTTT36TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGAGGAGCTCAATC
EST2376 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_26_06.M13+_F01.ab1, mRNA sequence.
GE652049.1:30-49
TATCGGCCATTACGGCCGGGGAAGCCTTT30TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGGAGCTCAATCTA
Agrostemma githago genome assembly, chromosome: 10.
OY288248.1:73829683-73829702
GAAAAGTCAAACCTCCGTGTTCCACAGGGA73829683GGAGTCACCGTTTCTGACAAGCTCTTCTCTGAATTCTGCTGTTGTGGGTC
Agrostemma githago genome assembly, chromosome: 19.
OY288257.1:64140720-64140739
GAAAAGTCAAACCTCCGTGTTCCACAGGGA64140720GGAGTCACCGTTTCTGACAAGCTCTTCTCTGAATTCTGGCGTTGTGGGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTCAGAAACGGTGACTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTCAGAAACGGTGACTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.372 | 0.363 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTCAGAAACGGTGACTCC&k=0&no_gap=0&offset=0&limit=50
0.390 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGTCACCGTTTCTGACAA&k=0&no_gap=0&offset=0&limit=46
0.391 | 0.001 | cgi_end;

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