GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:05:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BONOZ14TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOZ14, genomic survey sequence.
BZ484352.1:250-273
TAGATGGCCTTTGCCCATTTAGTTTTAAGG250TTGTCTTTCAGATTGAAAACTTCGTACCTCTCATCTTATTCTACTTGCTCATCT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:4827999-4828022
TAGATGGCATTTGCCCGTTTAGTTTTAAGG4827999TTGTCTTTCAGATTGAAAACTTCGTACTTCTCATCTCATTGTACTTGGTCATCT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:41980631-41980654
TAGATGGCCTTTGCCCATTTAGTTTTAAGG41980631TTGTCTTTCAGATTGAAAACTTCGTACCTCTCATCTTATTCTACTTGCTCATCT
Brassica napus var. napus clone Bna.AP1_chrA07_20115543_25629-3, genomic survey sequence.
KM387864.1:1235-1258
AGATGACCAAGTACAATGAGATGAGAAGTA1235CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAATGCCATCTA
Brassica napus var. napus clone Bna.AP1_chrA07_20115543_Campino, genomic survey sequence.
KM387865.1:1167-1190
AGATGACCAAGTAGAATGAGATGAGAAGTA1167CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAAGGCCATCTA
Brassica napus subsp. rapifera clone Bna.AP1_chrA07_20115543_MagresPajberg, genomic survey sequence.
KM387866.1:1078-1101
AGATGACCAAGTAGAATGAGATGAGAAGTA1078CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAATGCCATCTA
Brassica napus var. napus clone Bna.AP1_chrA07_20115543_Silona, genomic survey sequence.
KM387867.1:1234-1257
AGATGACCAAGTACAATGAGATGAGAAGTA1234CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAATGCCATCTA
Brassica napus var. napus clone Bna.AP1_chrC06_30791920_25629-3, genomic survey sequence.
KM387880.1:966-989
AGATGACCAAGTAGAATAAAATGAGAGGTA966CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAATGGGCAAAGGCCATCTA
Brassica napus var. napus clone Bna.AP1_chrC06_30791920_Campino, genomic survey sequence.
KM387881.1:967-990
AGATGAGCAAGTAGAATAAGATGAGAGGTA967CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAATGGGCAAAGGCCATCTA
Brassica napus subsp. rapifera clone Bna.AP1_chrC06_30791920_MagresPajberg, genomic survey sequence.
KM387882.1:967-990
AGATGAGCAAGTAGAATAAGATGAGAGGTA967CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAATGGGCAAAGGCCATCTA
Brassica napus var. napus clone Bna.AP1_chrC06_30791920_Silona, genomic survey sequence.
KM387883.1:966-989
AGATGACCAAGTAGAATAAAATGAGAGGTA966CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAATGGGCAAAGGCCATCTA
Brassica oleracea var. alboglabra clone BoB028L01, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
EU642504.1:73950-73973
AGATGAGCAAGTAGAATAAGATGAGAGGTA73950CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAATGGGCAAAGGCCATCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028I01, complete sequence.
AC189298.1:32818-32841
AGATGACCAAGTAGAATGAGATGAGAAGTA32818CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAAGGCCATCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence.
AC189458.2:63554-63577
AGATGACCAAGTAGAATGAGATGAGAAGTA63554CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAAGGCCATCTA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:49504926-49504949
AGATGACCAAGTAGAATAAAATGAGAGGTA49504926CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAATGGGCAAAGGCCATCTA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:24607093-24607116
AGATGACCAAGTACAATGAGATGAGAAGTA24607093CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAATGCCATCTA
Brassica rapa genome, scaffold: A07.
LR031574.1:23524959-23524982
AGATGACCAAGTACAATGAGATGAGAAGTA23524959CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAATGCCATCTA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:39992772-39992795
AGATGAGCAAGTAGAATAAGATGAGAGGTA39992772CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAATGGGCAAAGGCCATCTA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:23791964-23791987
AGATGACCAAGTACAATGAGATGAGAAGTA23791964CGAAGTTTTCAATCTGAAAGACAACCTTAAAACTAAACGGGCAAATGCCATCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTCTTTCAGATTGAAAACTTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTCTTTCAGATTGAAAACTTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.174 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTCTTTCAGATTGAAAACTTCG&k=0&no_gap=0&offset=0&limit=50
0.894 | 0.719 | search_minus_done; http://172.18.8.135:50400/match?q=CGAAGTTTTCAATCTGAAAGACAA&k=0&no_gap=0&offset=0&limit=47
0.904 | 0.010 | cgi_end;

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