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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:44:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 98 from Patent WO2009016212.
GN042611.1:313-332
GAAGAATCACAAGTTCCACACCGGTAGTGA313TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
Sequence 98 from patent US 8507753.
HJ342754.1:313-332
GAAGAATCACAAGTTCCACACCGGTAGTGA313TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
Sequence 227 from patent US 8952218.
HK420319.1:348-367
GAAGAATCACAAGTTCCACACCGGTAGTGA348TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
Sequence 227 from Patent EP2373792.
JB333403.1:348-367
GAAGAATCACAAGTTCCACACCGGTAGTGA348TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
Sequence 227 from patent US 10975382.
MX539456.1:348-367
GAAGAATCACAAGTTCCACACCGGTAGTGA348TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a016P13_T7.
AM391422.1:299-318
GAAGAATCACAAGTTCCACACCGGTAGTGA299TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
1-E03 suppression subtractive hybridization library of dominant genic male sterile (DGMS) Brassica napus Brassica napus cDNA, mRNA sequence.
EE392270.1:351-370
GAAGAATCACAAGTTCCACACCGGTAGTGA351TTGTGACGTCATAGCTCACCTGT
76ETGS72_UP_019_D09_21MAY2005_073 76ETGS72 Brassica napus cDNA 5', mRNA sequence.
EE450921.1:340-359
GAAGAATCACAAGTTCCACACCGGTAGTGA340TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
oeg92g03.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH994346.1:588-607
GAAGAATCACAAGTTCCACACCGGTAGTGA588TTGTGACGTCATAGCTCACCTGGTATGTGTGATTTCATTTTGCCAAGTAA
BONIL03TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONIL03, genomic survey sequence.
BZ452453.1:479-498
GAAGAATCACAAGTTCCACACCGGTAGTGA479TTGTGACGTCATAGCTCACCTGGTATGTGTGATTTCATTTTGCCAAGTAA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:20234508-20234527
GAAGAATCACAAGTTCCACACCGGTAGTGA20234508TTGTGACGTCATAGCTCACCTGGTATGTGTGAATTCATTTTGCCAAGTAA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:20262760-20262779
GAAGAATCACAAGTTCCACACCGGTAGTGA20262760TTGTGACGTCATAGCTCACCTGGTATGTGTGAATTCATTTTGCCAAGTAA
B.oleracea mRNA for asparagine synthetase.
X84448.1:326-345
GAAGAATCACAAGTTCCACACCGGTAGTGA326TTGTGACGTCATAGCTCACCTGTACGAGGAGCATGGTGAGAATTTTGTGG
Cyprideis torosa.
OB660475.1:43555-43574
GTTCTATCCTGCATGGAAGGAGTAGCGCAG43555TTGTGACGTCATAGCTCACCTTCTTCAACGGTGAATGAGTTGCACTGAGA
Zeuzera pyrina genome assembly, chromosome: 2.
OU015618.1:9254710-9254729
CGACAAAATTTAAATCGAGAATTGTCATCT9254710TTGTGACGTCATAGCTCACCCCTCCACTAATTGAGAAAGTGACAACACCG
Zeuzera pyrina genome assembly, chromosome: 8.
OU015625.1:20954151-20954170
CGACAAAATTTAAACCAAGAATCGCCATCT20954151TTGTGACGTCATAGCTCACCCGTCCACCAATTGAGAAAGTGACAACACAG
Eilema sororculum genome assembly, chromosome: 28.
OU618560.1:2843448-2843467
GGGGAATAAACATTGTAAGTGATTAGCACG2843448TTGTGACGTCATAGCTCACCAGCTAGCCTCAAGTAAAGTAGTGAAGTCAT
Ecdyonurus torrentis genome assembly, chromosome: 5.
OX439132.1:40709888-40709907
TTTTCCATTCATAAAATCACTCCTGCGGGT40709888TTGTGACGTCATAGCTCACCTGTTTCTGCGTGCGTGGACTAATGAACTAT
Ecdyonurus torrentis genome assembly, chromosome: 6.
OX439133.1:5605391-5605410
GTTTGCCAGTTTGCCAGGTCAGTTGCGGGT5605391TTGTGACGTCATAGCTCACCTGTTTCTGCGCGCGTGGTCGACTAGTGAGC
Cabera pusaria genome assembly, chromosome: 1.
OX940886.1:14049929-14049948
TCTAATACGTCGCAAAATTTTCGCGCATCT14049929TTGTGACGTCATAGCTCACCACACTGTCCCCACAGATTAAATCTTTTTAA
Cabera pusaria genome assembly, chromosome: 17.
OX940902.1:4873717-4873736
TCTAAAACGCCGCCAAATTTTCGTGAGCCT4873717TTGTGACGTCATAGCTCACCACACTGTTCCCGCAGGTTAAATCTTTGTAA
Cabera pusaria genome assembly, chromosome: 20.
OX940905.1:9104471-9104490
TCTAAAACGCCGCAAAATTTTCGCGCGCCT9104471TTGTGACGTCATAGCTCACCACACTGTCCCCACAGATTAAATCTTTGTAA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:54318423-54318442
TTACTTGGCAAAATGAATTCACACATACCA54318423GGTGAGCTATGACGTCACAATCACTACCGGTGTGGAACTTGTGATTCTTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:54346682-54346701
TTACTTGGCAAAATGAATTCACACATACCA54346682GGTGAGCTATGACGTCACAATCACTACCGGTGTGGAACTTGTGATTCTTC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:54839063-54839082
TTACTTGGCAAAATGAAATCACACATACCA54839063GGTGAGCTATGACGTCACAATCACTACCGGTGTGGAACTTGTGATTCTTC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:54885314-54885333
TTACTTGGCAAAATGAAATCACACATACCA54885314GGTGAGCTATGACGTCACAATCACTACCGGTGTGGAACTTGTGATTCTTC
Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome.
CP081864.1:1040622-1040641
GTATGCGCCGCGCAACCAGCTCAGTGCCTG1040622GGTGAGCTATGACGTCACAAGCGGCCTATTGGATGGCTTAACGCTGGGAA
Limnephilus marmoratus genome assembly, chromosome: 27.
OU862933.1:24900067-24900086
TTGTCTCAAGGAGCATCATAACTCACTAAC24900067GGTGAGCTATGACGTCACAACTTTTTGTAGCTGGATTTTCTAGGCGAACC
Ecdyonurus torrentis genome assembly, chromosome: 1.
OX439128.1:51000176-51000195
ACAGCTCACTTGTGCACGCGCGCGGAAATA51000176GGTGAGCTATGACGTCACAAACCCGAAGCTATCATTTTGGAAATGAAAAA
Ecdyonurus torrentis genome assembly, chromosome: 2.
OX439129.1:14204353-14204372
GAAACACGTGGACTCACGCGCGCAGAAACA14204353GGTGAGCTATGACGTCACAAACCCGCAGCTGCGATTTTGGTAAAGGAAAA
Ecdyonurus torrentis genome assembly, chromosome: 3.
OX439130.1:14523531-14523550
TCACAGCTCACTAGTCCGCGAGCGGAAACA14523531GGTGAGCTATGACGTCACAAAGCTATGACGTCACAAACCCGCAGCAGTGA
Ecdyonurus torrentis genome assembly, chromosome: 4.
OX439131.1:17035220-17035239
ACATCTCACTAGTCCACGCGCGCGGAAACA17035220GGTGAGCTATGACGTCACAAACCCACAGTTGCAATTTTTTTGGGAATGGA
Ecdyonurus torrentis genome assembly, chromosome: 6.
OX439133.1:8534436-8534455
ACAGCTAACTAGTCCACGCGCGCTGAAACA8534436GGTGAGCTATGACGTCACAAAACCGCAGCTGTGATTTTGTGAATGTAAAA
Ecdyonurus torrentis genome assembly, chromosome: 9.
OX439136.1:6164375-6164394
AATGCTAGCTTCTTTCCACGCCTGTGGACT6164375GGTGAGCTATGACGTCACAAACCCGCAGCTGCCATTCAGTAAATGGAAAA
Amaurobius ferox genome assembly, chromosome: 18.
OX578153.1:122559675-122559694
TCTACGATGTTCGAGGTTCATTCCCTGAAT122559675GGTGAGCTATGACGTCACAATATATTTTAATAATGCGGATAATGCGTGAA
Cabera pusaria genome assembly, chromosome: 18.
OX940903.1:14041600-14041619
TTACAAATATTTAATCTGTGGAGACAGTGT14041600GGTGAGCTATGACGTCACAAAGGCGCGCGAAACTTTTGCGGCGTTTTAGA
Cabera pusaria genome assembly, chromosome: 26.
OX940911.1:1235457-1235476
TTTCAAAGTGTTAATCTGTGGGGACAGTGT1235457GGTGAGCTATGACGTCACAACGGCGCGCAAAAATTTTTCGGCGTTTTAGA
Cabera pusaria genome assembly, chromosome: 30.
OX940915.1:14992364-14992383
TTACAAAGATTTAATCTGTGGGGACAGTGT14992364GGTGAGCTATGACGTCACAAAGGCGCGCGAAAATTTTGCGGCGTTTTAGA
Corella eumyota genome assembly, chromosome: 3.
OY720099.1:17318828-17318847
CCAAAAACGCTTGATCCAGACCAACAAAGA17318828GGTGAGCTATGACGTCACAAATGCTTTTGTGACGTCACGTGTTTGGCGGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTGACGTCATAGCTCACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTGACGTCATAGCTCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.522 | 0.513 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGACGTCATAGCTCACC&k=0&no_gap=0&offset=0&limit=50
0.604 | 0.082 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGAGCTATGACGTCACAA&k=0&no_gap=0&offset=0&limit=28
0.615 | 0.011 | cgi_end;

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