GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-19 02:14:13, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Citrullus lanatus cultivar Allsugar chromosome 10.
CP155018.1:6332356-6332376
AGATTAGAATACTTTAGATATCAGTAAAAT6332356TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar Charleston Gray chromosome 10.
CP155151.1:6524786-6524806
AGATTAGAATACTTTAGATATCAGTAAAAT6524786TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar Calhoun Gray chromosome 10.
CP155162.1:6512004-6512024
AGATTAGAATACTTTAGATATCAGTAAAAT6512004TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar PKR6 chromosome 10.
CP155173.1:5882905-5882925
AGATTAGAATACTTTAGATATCAGTAAAAT5882905TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar Sugarlee chromosome 10.
CP155184.1:6459330-6459350
AGATTAGAATACTTTAGATATCAGTAAAAT6459330TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar ShiHongNo2 chromosome 10.
CP155195.1:6156822-6156842
AGATTAGAATACTTTAGATATCAGTAAAAT6156822TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar PI 288522 chromosome 10.
CP155206.1:6302122-6302142
AGATTAGAATACTTTAGATATCAGTAAAAT6302122TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar DaBanHongZiGua chromosome 10.
CP155217.1:6113307-6113327
AGATTAGAATACTTTAGATATCAGTAAAAT6113307TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar PI 381740 chromosome 10.
CP155228.1:6106687-6106707
AGATTAGAATACTTTAGATATCAGTAAAAT6106687TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar SanBaiGua chromosome 10.
CP155239.1:6094802-6094822
AGATTAGAATACTTTAGATATCAGTAAAAT6094802TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar PI 254622 chromosome 10.
CP155250.1:5973664-5973684
AGATTAGAATACTTTAGATATCAGTAAAAT5973664TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus cultivar HeiShanRen chromosome 10.
CP155261.1:6332356-6332376
AGATTAGAATACTTTAGATATCAGTAAAAT6332356TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus amarus cultivar PI 296341-FR chromosome 10.
CP155272.1:6197593-6197613
AGATTAGAATACTTTAGATATCAGTAAAAT6197593TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus amarus cultivar PI 189225 chromosome 10.
CP155283.1:6071055-6071075
AGATTAGAATACTTTAGATATCAGTAAAAT6071055TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus amarus cultivar RCAT 055816 chromosome 10.
CP155294.1:6570725-6570745
AGATTAGAATACTTTAGATATCAGTAAAAT6570725TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus amarus cultivar PI 271769 chromosome 10.
CP155305.1:6186035-6186055
AGATTAGAATACTTTAGATATCAGTAAAAT6186035TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus subsp. mucosospermus cultivar PI 595203 chromosome 10.
CP155316.1:6396883-6396903
AGATTAGAATACTTTAGATATCAGTAAAAT6396883TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus amarus cultivar PI 482276 chromosome 10.
CP155327.1:7440942-7440962
AGATTAGAATACTTTAGATATCAGTAAAAT7440942TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus lanatus subsp. mucosospermus cultivar PI 532732 chromosome 10.
CP155338.1:6508148-6508168
AGATTAGAATACTTTAGATATCAGTAAAAT6508148TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus colocynthis cultivar PI 537300 chromosome 10.
CP155349.1:6021250-6021270
AGATTAGAATACTTTACATATCAGTAAAAT6021250TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus colocynthis cultivar PI 652554 chromosome 10.
CP155382.1:6106136-6106156
AGATTAGAATACTTTACATATCAGTAAAAT6106136TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus rehmii cultivar PI 670011 chromosome 10.
CP155404.1:7295883-7295903
AGATTAGAATACTTTAGATATCAGTAAAAT7295883TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus ecirrhosus cultivar PI 673135 chromosome 10.
CP155415.1:6200782-6200802
AGATTAGAATACTTTAGATATCAGTAAAAT6200782TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Citrullus colocynthis genome assembly, chromosome: 5.
OZ021739.1:6093263-6093283
AGATTAGAATACTTTACATATCAGTAAAAT6093263TTGTGATCGAGATGAATTCCCACATTCAAAAGCATCACATAATACAGAAGT
Sequence 63470 from Patent EP2761003.
JC677689.1:125-145
ATACCACTCTGTTCTGCGATGCTTTTGAGT125GGGAATTCATCTCGATCACAAATTTAACTGTTGTTTTTTAAGTGTTCTAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTGATCGAGATGAATTCCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTGATCGAGATGAATTCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.154 | 0.145 | search_plus_done; http://172.18.8.135:50800/match?q=TTGTGATCGAGATGAATTCCC&k=0&no_gap=0&offset=0&limit=50
0.266 | 0.112 | search_minus_done; http://172.18.8.135:50800/match?q=GGGAATTCATCTCGATCACAA&k=0&no_gap=0&offset=0&limit=26
0.267 | 0.001 | cgi_end;

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