GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 11:09:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 5, clone: LjT46H07, TM0909.
AP010642.1:78103-78122
CACGTAGGTAGAACCATGGTGACAACATAT78103TTGTGCATCAAAACTAGCTCAACTATAATAATAATAATAATAATAATAAT
Lotus japonicus genomic DNA, chromosome 5, clone: LjT45M19, TM1126b.
AP010529.1:6953-6972
CACGTAGGTAGAACCATGGTGACAACATAT6953TTGTGCATCAAAACTAGCTCAACTATAATAATAATAATAATAATAATAAT
Phorcus lineatus genome assembly, chromosome: 9.
OV121089.1:14113277-14113296
TCAGCCTTTGGCCTTTATTTAGGGCATCCA14113277TTGTGCATCAAAACTAGCTCATTTACAGCAGGGATTGTTGTGCTCACAGA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:56638885-56638904
ATTATTATTATTATTATTATTATTATAGTT56638885GAGCTAGTTTTGATGCACAAATATGTTGTCACCATGGTTCTACCTACGTG
Lotus japonicus Fe-superoxide dismutase 2 precursor (sodB) gene, complete cds.
AY525604.1:829-848
ATTATTATTATTATTATTATTATTATAGTT829GAGCTAGTTTTGATGCACAAATATGTTGTCACCATGGTTCTACCTACGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTGCATCAAAACTAGCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTGCATCAAAACTAGCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGCATCAAAACTAGCTC&k=0&no_gap=0&offset=0&limit=50
0.126 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=GAGCTAGTTTTGATGCACAA&k=0&no_gap=0&offset=0&limit=47
0.128 | 0.001 | cgi_end;

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