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2025-04-09 05:26:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Schima mertensiana mRNA, contig: Sm_rep_c5091.
FX150668.1:634-653

GATATAATTAGCCAGCAATCTTTGGTTTTG634TTGTGCTTAGCGACCTCTTCAAATAGGTGGACTTTCGGATCTGAAGCCAT

TSA: Camellia sinensis tea_rep_c3447 mRNA sequence.
KA282870.1:563-582

GCTATAATTAGCCAGCAATCTTTGGTTTTG563TTGTGCTTAGCGACCTCTTCAAACAGGTGAACTTTCGGATCTGAAGCCAT

Cenchrus purpureus cultivar elephant grass chromosome B6.
CP053466.1:124594377-124594396

GTAGCAGGCTGCTGGGTGGGTTGCTCGGGG124594377TTGTGCTTAGCGACCTCTTCCCGGATGGGGGAGAGATGGCTGCGCGGAGG

Camellia sinensis mRNA, clone: RT20H05, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS949339.1:147-166

ATGGCTTCAGATCCGAAAATTCACACATTT147GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC

Camellia sinensis mRNA, clone: RT7G11, unspecified EST, sequenced using T7 primer, expressed in roots.
FS951913.1:134-153

TGCAGTTGCAGTGAAAAAATGGCTTCAGTT134GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC

Camellia sinensis mRNA, clone: SS02F10, 5' end sequence, expressed in shoot stems.
FS952347.1:156-175

ATGGCTTCAGATCCGAAAATTCACACATTT156GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTGTC

Camellia sinensis mRNA, clone: SS10H05, 5' end sequence, expressed in shoot stems.
FS952914.1:146-165

ATGGCTTCAGATCCGAAAATTCACACATTT146GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC

Camellia sinensis mRNA, clone: SS17C07, 5' end sequence, expressed in shoot stems.
FS953377.1:149-168

ATGGCTTCAGATCCGAAAATTCACACATTT149GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTACTGGCTAATTTTATC

Camellia sinensis mRNA, clone: SS22E02, 5' end sequence, expressed in shoot stems.
FS953743.1:154-173

ATGGCTTCAGATCCGAAAATTCACACATTT154GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTGTC

EST1067 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_58.M13+_B08.ab1, mRNA sequence.
GE650740.1:143-162

ATGGCTTCAGATCCGAAAGTTCACCTGTTT143GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC

EST2180 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_23_29.M13+_E04.ab1, mRNA sequence.
GE651853.1:145-164

ATGGCTTCAGATCCGAAAGTTCACCTGTTT145GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC

EST2376 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_26_06.M13+_F01.ab1, mRNA sequence.
GE652049.1:137-156

ATGGCTTCAGATCCGAAAGTTCACCTGTTT137GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC

Tea215_2006-02-14_1/Tea215_G11_042_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK476320.1:150-169

ATGGCTTCAGATCCGAAAATTCACACATTT150GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC

TSA: Schima mertensiana mRNA, contig: Sm_rep_c4184.
FX149761.1:88-107

ATGGCTTCAGATCCGAAAATTCACACATTT88GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAGTGATATC

TSA: Camellia sinensis tea_rep_c8259 mRNA sequence.
KA287635.1:118-137

ATGGCTTCAGATCCGAAAATTCACACATTT118GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC

TSA: Camellia sinensis tea_rep_c24886 mRNA sequence.
KA303218.1:76-95

AWGGCTTCAGATCCGAAAGTTCACCTGTTT76GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC

Camellia sinensis clone U10BCDNA 0132 cytochrome b5 mRNA, complete cds; chloroplast.
HM003297.1:147-166

ATGGCTTCAGATCCGAAAATTCACACATTT147GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC

Pichia sorbitophila strain CBS 7064 chromosome D complete sequence.
FO082056.1:348162-348181

TCCACCGAACAATTGAGGACCATCACCGAA348162GAAGAGGTCGCTAAGCACAACACGTCGTCAGACTTGTGGGTTGTGTACAA

Pichia sorbitophila strain CBS 7064 chromosome C complete sequence.
FO082057.1:340269-340288

TCCACCGAACAGTTGAAGACCATCACCGAA340269GAAGAGGTCGCTAAGCACAACACGACGTCAGACTTGTGGGTTGTGTACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGCTTAGCGACCTCTTC&k=0&no_gap=0&offset=0&limit=50
0.997 | 0.886 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAGGTCGCTAAGCACAA&k=0&no_gap=0&offset=0&limit=47
1.008 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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