GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 16:10:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus carolinensis genome assembly, chromosome: 7.
LR738596.1:113594450-113594469
ACCTACTGGCCACAGTAGACAGGGGAGTGT113594450TTGTGTTGGGTGAAGGAACACAATCTAATAAGAGATGCATAAAACAGAGA
Sciurus vulgaris genome assembly, chromosome: 7.
LR738617.1:115595094-115595113
ACCTACTGGCCACAGTAGACAGGGGAGTGT115595094TTGTGTTGGGTGAAGGAACACAATCTAATAAGAGATGCGTAAAACAGAGA
Sequence 4278 from Patent EP2148885.
HI533306.1:142-161
AGTGATTAAGGTGCCAAGATGTGACTATGA142TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
Sequence 4278 from patent US 9271455.
HL706641.1:142-161
AGTGATTAAGGTGCCAAGATGTGACTATGA142TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
Sequence 270 from patent US 11802288.
OT811754.1:1485-1504
AGTGATTAAGGTGCCAAGATGTGACTATGA1485TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
sa60h11.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-3742 5', mRNA sequence.
AI461278.1:267-286
AGTGATTAAGGTGCCAAGATGTGACTATGA267TTGTGTTGGGTGAAGGAACATGGAGTCATGGTTGTGCCGATGACTTTGTG
se68e08.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-2175 5', mRNA sequence.
AW186493.1:224-243
AGTGATTAAGGTGCCAAGATGTGACTATGA224TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
sac47f04.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-3319 5', mRNA sequence.
BG405063.1:61-80
AGTGATTAAGGTGCCAAGATGTGACTATGA61TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
GLPAR07TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FK002220.1:282-301
AGTGATTAAGGTGCCAAGATGTGACTATGA282TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:17176116-17176135
AGTGATTAAGGTGCCAAGATGTGACTATGA17176116TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
Glycine max RING finger protein (RFP1) mRNA, complete cds.
EU786799.1:222-241
AGTGATTAAGGTGCCAAGATGTGACTATGA222TTGTGTTGGGTGAAGGAACATGGTTTCATGGTTGTGTTGTTGCCTTTGTG
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737394.1:45882073-45882092
AATAAGGAACTACGACAACAACGACTGTGC45882073TTGTGTTGGGTGAAGGAACAATTTTTAGAAAAAAAAGTGAGATGAACAAT
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737505.1:43299796-43299815
AATAAGGAACTACGACAACAACGACTATGC43299796TTGTGTTGGGTGAAGGAACAATTTTTAGAAAAAAAAGTGAGATGAACAAT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737613.1:42371446-42371465
AATAAGGAACTACGACAACAACGACTGTGC42371446TTGTGTTGGGTGAAGGAACAATTTCTAGAAAAAAAAGTGAGATGAACAAT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737642.1:45506012-45506031
AATAAGGAACTACGACAACAACGACTATGC45506012TTGTGTTGGGTGAAGGAACAATTTTTAGAAAAAAAAGTGAGATGAACAAT
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737875.1:39536453-39536472
AATAAGGAACTACGACAACAACGACTGTGC39536453TTGTGTTGGGTGAAGGAACAATTTCTAGAAAAAAAAGTGAGATGAACAAT
Hordeum bulbosum genome assembly, chromosome: 3H_4.
OY737889.1:37037002-37037021
AATAAGGAACTACGACAACAACGACTGTGC37037002TTGTGTTGGGTGAAGGAACAATTTCTAGAAAAAAAAGTGAGATGAACAAT
Amphimallon solstitiale genome assembly, chromosome: 5.
OY720679.1:13756726-13756745
TGATGAAGTGTATGTTGATGTTTCCATTTA13756726TTGTGTTGGGTGAAGGAACAATTTGCACGCACATAAAATTGATTACTAAA
454GmaGlobSeed310195 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK575563.1:201-220
CACAAAGGCAACAACACAACCATGAAACCA201TGTTCCTTCACCCAACACAATCATAGTCACATCTTGTGACACCTTAAACA
37177 Glycine max young leaves DNA Glycine max STS genomic, sequence tagged site.
GF092715.1:240-259
CACAAAGGCAACAACACAACCATGAAACCA240TGTTCCTTCACCCAACACAATCATAGTCACATCTTGGCACCTTAATCACT
Soybean clone JCVI-FLGm-26N3 unknown mRNA.
BT098469.1:1459-1478
CACAAAGGCAACAACACAACCATGAAACCA1459TGTTCCTTCACCCAACACAATCATAGTCACATCTTGGCACCTTAATCACT
Dioctria linearis genome assembly, chromosome: 3.
OZ005742.1:119125766-119125785
CTCTGAAAACAGAATCACTGCCATCAAAAA119125766TGTTCCTTCACCCAACACAACAAAAAAAAACTACAACGTTTTCTAGGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTGTTGGGTGAAGGAACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTGTTGGGTGAAGGAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.427 | 0.418 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGTTGGGTGAAGGAACA&k=0&no_gap=0&offset=0&limit=50
0.629 | 0.202 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTCCTTCACCCAACACAA&k=0&no_gap=0&offset=0&limit=32
0.631 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).