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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:11:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

G.hir-stem 1121 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence.
DN758617.1:391-410
CAATTGCAGATTTCTTCTGTTCTTAGTTCT391TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTATGTATG
G.hir-stem 1141 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence.
DN758637.1:391-410
CAATTGCAGATTTCTTCTGTTCTTAGTTCT391TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTATGTATG
GH_TMIRS_176_A07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW513770.1:186-205
CAATTGCAGATTTCTTCTGTTCTTAGTTCT186TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTCTGTGCAAGTGTGT
2P12-A3-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG454731.1:246-265
CAATTGCAGATTTCTTCTGTTCTTAGTTCT246TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTATGTATG
E04-54E04 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK795586.1:493-512
CAATTGCAGATTTCTTCTGTTCTTAGTTCT493TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTATGTATG
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94567589-94567608
CAATTGCAGATTTCTTCTGTTCTTAGTTCT94567589TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTATGTATG
Corylus americana cultivar Rush chromosome 2.
CP125815.1:26348900-26348919
ATCAATATAGGAGCTCACTCAAGCCTGATA26348900TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATATGGAGATGAAGGT
Corylus americana cultivar Rush chromosome 5.
CP125818.1:16988480-16988499
ATCAATATAGGAGCTTACTCAAGCCTAATA16988480TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATATGGAGAGCAAGGT
Corylus americana cultivar Rush chromosome 6.
CP125819.1:12909739-12909758
ATCAATATAGGAGCCCACTCATGCCTGATA12909739TTGTTGAGGCATTAGTTTGCATTAGATATTGGTTATATGGAGATGAAGGT
Corylus americana cultivar Rush chromosome 6.
CP125819.1:18189933-18189952
ATAAATATAGGAGCTCACTCAAGCCTAATA18189933TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATATGGAGATGAAGGT
Corylus americana cultivar Rush chromosome 9.
CP125822.1:8519298-8519317
TTTAATATAGGAGCTCACTCAAGCCTCATA8519298TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATTACAGAGCAAGGTA
Corylus americana cultivar Winkler chromosome 1.
CP125825.1:17884624-17884643
ATCAGTATAAGAGTTTACTCAAACCTGATA17884624TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATATGGAGAGTAAGGT
Corylus americana cultivar Winkler chromosome 3.
CP125827.1:28447434-28447453
ATCAATATAGGAGCTCACTCAAGCCTAATA28447434TTGTTGAGGCATTAGTTTGCACTGAATATTGTTATATGGAGATCAAGGTA
Corylus americana cultivar Winkler chromosome 6.
CP125830.1:12014668-12014687
ATCAATATAGGAGCCCACTCATGCCTGATA12014668TTGTTGAGGCATTAGTTTGCATTAGATATTGGTTATATGGAGATAAAGGT
Corylus americana cultivar Winkler chromosome 6.
CP125830.1:16454162-16454181
ATAAATATAGGAGCTCACTCAAGCCTAATA16454162TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATTTGCATATTTAATT
Gossypium herbaceum clone NBRI_A2_652 simple sequence repeat marker, mRNA sequence.
HQ527790.1:272-291
AATNTGCAGATTTCTTCTGTTCTTAGTTCT272TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCNGTTGTATGTATGTAT
Gossypium herbaceum clone NBRI_B_1426 simple sequence repeat marker, mRNA sequence.
HQ527791.1:18-37
CTTCTGTTCTTAGTTCT18TTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTATGTATG
Corylus avellana genome assembly, chromosome: ca2.
LR899424.1:46399153-46399172
ATCAATATAGGAGCTCACTCAAGCCTGACA46399153TTGTTGAGGCATTAGTTTGCACCAAAGATTGGTTATATGGAGATGAAGGT
Corylus avellana genome assembly, chromosome: ca3.
LR899425.1:33772207-33772226
ATCAATGTAGGAGCTCACTCAAGCCAAATA33772207TTGTTGAGGCATTAGTTTGCACTAAAGATTCGTTATATGGAGATCAAGGT
Corylus avellana genome assembly, chromosome: ca6.
LR899428.1:18441488-18441507
ATCAATATAGGAGCTCACTCAAGCCCGATA18441488TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATATGGAGATGAAGGT
Corylus avellana genome assembly, chromosome: ca6.
LR899428.1:18464330-18464349
ATCAATATAGGAGCCCACTCAAGCTTGATA18464330TTGTTGAGGCATTAGTTTGCACGAGAGATTGGTTATTTGGAGATGAAGGT
Corylus avellana genome assembly, chromosome: ca9.
LR899431.1:8931945-8931964
ATTAATATAGGAGCTCACTCAAGCCTCATA8931945TTGTTGAGGCATTAGTTTGCACTAGAGATTGGTTATTGTAGAGCAAGGTA
GA__Ed0043B08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0043B08r, mRNA sequence.
BQ411825.1:208-227
CATACTTTCTTACAACGACGCCCATTTTTT208GCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTG
COT_DD_B08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence.
DT048657.1:190-209
CATACATACATACAACGACGCACATTTTTT190GCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATGG
COT_DE_F08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to unknown, mRNA sequence.
DT048771.1:176-195
CATACATACATACAACGACGCACATTTTTT176GCAAACTAATGCCTCAACAAAGAACTATGATGC
COT_DE_F10 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence.
DT048773.1:203-222
CATACATACATACAACGACGCACATTTTTT203GCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTG
Carpinus viminea chromosome 1.
CP054667.1:27497282-27497301
AATCTCTAGTGCAAACAGAAAATCTCTAGT27497282GCAAACTAATGCCTCAACAATATCAAGTTTGAGTGAGCTCCTATATTGAT
Carpinus viminea chromosome 2.
CP054668.1:33891327-33891346
ACCTTGATCTCCATATAACCAATCTTTAGT33891327GCAAACTAATGCCTCAACAATATCAAGCTTGAGTGAGCCCCTATATTGAT
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:283958-283977
CATACATACATACAACGACGCACATTTTTT283958GCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTG
Corylus americana cultivar Rush chromosome 1.
CP125814.1:22034608-22034627
ACATTGATCTCCATATAATCAATCTCTAGT22034608GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCCTATATTGAT
Corylus americana cultivar Rush chromosome 1.
CP125814.1:37156874-37156893
ACCTTGATCTCCATATAACCAATCTTTAGT37156874GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCTTATATTGAT
Corylus americana cultivar Rush chromosome 5.
CP125818.1:13108202-13108221
ACCTTCATCTCCATATAACCAATCTCTAGT13108202GCAAACTAATGCCTCAACAATATCAAGCTTGAGTGAGCTCTTATATTGAT
Corylus americana cultivar Rush chromosome 6.
CP125819.1:9699317-9699336
ACCTTCATCTCTATATAACCAATCTCTAGT9699317GCAAACTAATGCCTCAACAATATCAGGCTAAGTGAGCTCCTATATTGATC
Corylus americana cultivar Rush chromosome 6.
CP125819.1:10908069-10908088
ACCTTGCTTTCCATATAACCAATCTCTAGT10908069GCAAACTAATGCCTCAACAATATCAGGTTTAAGTGAACTCCTATACTGAT
Corylus americana cultivar Rush chromosome 7.
CP125820.1:24783474-24783493
TTACCTTGCTCTCCATAACCAATCTTTTGT24783474GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCCTATATTGAT
Corylus americana cultivar Rush chromosome 8.
CP125821.1:14572097-14572116
ACCTTGATCTCCATATAACCAATCTCTAGT14572097GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCTTATATTGAT
Corylus americana cultivar Winkler chromosome 1.
CP125825.1:22254546-22254565
ACATTGATCTCCATATAATCAATCTCTAGT22254546GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCCTATATTGAT
Corylus americana cultivar Winkler chromosome 6.
CP125830.1:8847254-8847273
ACCTTCATCTCTATATAACCAATCTCTAGT8847254GCAAACTAATGCCTCAACAATATCAGGCTGAGTGAGCTCCTATATTGATC
Corylus americana cultivar Winkler chromosome 6.
CP125830.1:10074525-10074544
ACCTTGCTTTCCATATAACCAATCTCTAGT10074525GCAAACTAATGCCTCAACAATATCAGGTTTAAGTGAACTCTTATACTGAT
Corylus americana cultivar Winkler chromosome 6.
CP125830.1:20052616-20052635
ACCTTACTCTCTATATAATCAATCTCTAGT20052616GCAAACTAATGCCTCAACAACATCAGGTTTAAATGAACTCCTATATTGAT
Corylus americana cultivar Winkler chromosome 8.
CP125832.1:13271789-13271808
ACCTTGATCTCCATATAACCAATCTCTAGT13271789GCAAACTAATGCCTCAACAATATCAGGCCTGAGTGAGCTCTTATATTGAT
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:11970822-11970841
ACCTTGCCCTCCATATAACCAATCTCTAGT11970822GCAAACTAATGCCTCAACAATATGAGGCTTGAGTGAGCTCCTATATTGAT
Gossypium herbaceum clone NBRI_C_EYT27PB01APF00 simple sequence repeat marker, mRNA sequence.
HQ527784.1:200-219
CATACATACATACAACGACGCACATTTTTT200GCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGTCAATT
Corylus avellana genome assembly, chromosome: ca1.
LR899423.1:14416732-14416751
ACCTTCATCTTCATATAACCAATTTCTAGT14416732GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCTTATATTAAT
Corylus avellana genome assembly, chromosome: ca1.
LR899423.1:42598037-42598056
ACCTTGATCTCCATATAACCAATCTTTAGT42598037GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCTTATATTGAT
Corylus avellana genome assembly, chromosome: ca6.
LR899428.1:10015919-10015938
ACCTTCATCTCTATATAACCAATCTCTAGT10015919GCAAACTAATGCCTCAACAATATCAGGCTGAGTGAGCTCCTATATTGATC
Corylus avellana genome assembly, chromosome: ca7.
LR899429.1:18661159-18661178
TTACCTTGCTCTCCATAACCAATCTTTTGT18661159GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCCTATATTGAT
Corylus avellana genome assembly, chromosome: ca8.
LR899430.1:16191051-16191070
ACCTTGATCTCCATATAACCAATCTCTAGT16191051GCAAACTAATGCCTCAACAATATCAGGCTTGAGTGAGCTCTTATATTGAT
Impatiens glandulifera genome assembly, chromosome: 6.
OU015486.1:3516887-3516906
CTTTTTTTGTCCAACTAACCAATCTCTATA3516887GCAAACTAATGCCTCAACAACATCGGGCTTCATTGCACTACGATATTAGT
Dunaliella primolecta genome assembly, chromosome: 1.
OU611751.1:13233170-13233189
GCAACCCTATGCTCAAGCCATCAAGCGTGA13233170GCAAACTAATGCCTCAACAAAGACATGATCAAAGAGGAGATGGCCTGCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTTGAGGCATTAGTTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTTGAGGCATTAGTTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.593 | 0.584 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTTGAGGCATTAGTTTGC&k=0&no_gap=0&offset=0&limit=50
0.867 | 0.273 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAACTAATGCCTCAACAA&k=0&no_gap=0&offset=0&limit=28
0.885 | 0.019 | cgi_end;

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