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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 23:43:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfw2005b08.y1 Mdfw Malus domestica cDNA clone Mdfw2005b08 5' similar to TR:Q9ZR77 Q9ZR77 DISEASE RESISTANCE PROTEIN HOMOLOG, mRNA sequence.
CN491724.1:65-86
TAAAAAGCCTTGGTCAGAGAAAAGTTCTTA65TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTCTACTTGGAGA
Malus x domestica putative disease resistance gene analog NBS-LRR (FRGA-A45) gene, partial cds.
AF516618.1:222-243
TAAAAAGCCTTGGTCAGAGAAAAGTTCTTA222TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Malus prunifolia putative disease resistance gene analog NBS-LRR (RGA-I45) gene, partial cds.
AF516639.1:239-260
TAAAAAGCCTTGGTCAGAGAAAAGTTCTTA239TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40530952-40530973
TAAAGAGTCTAGGTCAGAGAAAAGTTCTTA40530952TTGTTGTTGATGATGTGGACAAATTAGACCAAATTGAAGCTTTACTAGGAAA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:5558632-5558653
TAAGAAGCCTTGGTCAGAGAAAAGTTCTTA5558632TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:5603564-5603585
TAAAAAGCCTTGGTCAGAGAAAAGTTCTTA5603564TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:4953550-4953571
TAAAAAGCCTTGGTCAGAGAAAAGTTCTTA4953550TTGTTGTTGATGATGTGGACAAATCAGAACAAATTGATGCTTTACTTGGAGA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:5134884-5134905
TAAAAAGCCTTGGTCAGAGAAAAGTTCTTA5134884TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:5144698-5144719
TAAAAAGCCTTGGCCAGAGAAAAGTTCTTA5144698TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTCTACTTGGAGA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29937412-29937433
TAAAGAGCCTAGGCAAGAGAAAAGTTCTTA29937412TTGTTGTTGATGATGTGGACAAATTAGACCAAATTGAAGCTTTACTAGGAAA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:31431929-31431950
TAAATAGCCTAGGTCAGACAAAGGTTCTTA31431929TTGTTGTTGATGATGTGGACAAATTGGAACAAATTGAAGCTTTACTTGGAGA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:28281800-28281821
TAAAGAGCCTAGGTCAGAGAAAAGTTATTA28281800TTGTTGTTGATGATGTGGACAAATTAGACCAAATTGAAGGTTTACTAGGAAA
Malus baccata clone OLE1-3 NBS-LRR-like protein gene, partial cds.
HQ399001.1:239-260
TAAGAAGCCTTGGTCAGAGAAAAGTTCTTA239TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Malus baccata clone OLE6-9 NBS-LRR-like protein gene, partial cds.
HQ399043.1:239-260
TAAGAAGCCTTGGTCAGAGAAAAGTTCTTA239TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Triticum aestivum genome assembly, chromosome: 1B.
LR862509.1:684127595-684127616
CCGGGCGACTCGAAGAGTTGGCGGAGGGTC684127595TTGTTGTTGATGATGTGGACAACGGCAATGGAAACGCCGGTTGCGGCCGGCG
Triticum aestivum genome assembly, chromosome: 1B.
OU015722.1:694903720-694903741
CCGGGCGACTCGAAGAGTTGGCGGAGGGTC694903720TTGTTGTTGATGATGTGGACAACGGCAATGGAAACGCCGGTTGCGGCCGGCG
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:32011906-32011927
TGAAAAGCCTAGGTCAGAGAAAAGTTCTTC32011906TTGTTGTTGATGATGTGGACAAATTAGCTCAAATTGAAGCCTTACTCGGAAA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26309779-26309800
TAAAGAGCCTAGGTCAGAGAAAAGTTCTTA26309779TTGTTGTTGATGATGTGGACAAATTTGACCAAATTGATGCTTTACTAGGAAA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26362338-26362359
TAAAGAGCCTAGGTCAGAGAAAAGTTCTTA26362338TTGTTGTTGATGATGTGGACAAATTTGACCAAATTGATGCTTTACTAGGAAA
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:4903103-4903124
TAAGAAGCCTTGGTCAGAGAAAAGTTCTTA4903103TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGA
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:34547648-34547669
TAAATAGTCTAGGTCGGAGAAAAGTTCTTA34547648TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAAA
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:26722288-26722309
TAAAGAGCCTAGGTCAGAGAAAAGTTCTTA26722288TTGTTGTTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTCGGAGA
Erpetoichthys calabaricus genome assembly, chromosome: 14.
LR536445.2:50908317-50908338
CAAACACAGATTGATATATTTGTGCATGAG50908317TTGTCCACATCATCAACAACAAAACATTTGTGAAATGACTCGTGGTATAAAA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:4340808-4340829
TTTCCGAGTAAAGCTTCAATTTGTTCTAAT4340808TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCTAGGCGATTTA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:31813861-31813882
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT31813861TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTCTTA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:30872400-30872421
TCTTCAAGTAAAGCTTCAATTTGTTCTGAT30872400TTGTCCACATCATCAACAACAATAAGAACTTTTCTCCGACCAAGGCTTTTTA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:30907145-30907166
TCTCCAAGTAAAACTTCAATTTGTTCTAAT30907145TTGTCCACATCATCAACAACAATAAGAACTTTTTTCTGCCCAAGGCTTTCGA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:30938570-30938591
TCTCCAAGTAGAGCTTCAATTTGTTCTAAT30938570TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:30971651-30971672
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30971651TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTCTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:30344272-30344293
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30344272TTGTCCACATCATCAACAACAATAAGAACTTTTCTATGACTAAGGCTATTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:30353077-30353098
TCTCCAACTAAAGCTTCAATTTGTTCTAAT30353077TTGTCCACATCATCAACAACAACAATAACTTTTCTCTTACCAAGGCTTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:30409627-30409648
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30409627TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTCTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:29889545-29889566
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT29889545TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:29959274-29959295
TCTCCAAATAAAGCTTCAATTTGTTCTGAT29959274TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:30006448-30006469
TCTCCAAGTAAAGCATCAATTTGTTCTGAT30006448TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCTAGGCTTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:30057676-30057697
TCTCCAAATAAAGCTTCAATTTGTTCTGAT30057676TTGTCCACATCATCAACAACAATAAGAACTTTTCTCCGACCAAGGCTTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:30098549-30098570
TCTTCAAGTAAAGCTTCAATTTGTTCTGAT30098549TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:30159486-30159507
TCTCCAAGTAAAGCTTCGATTTGTTCTAAT30159486TTGTCCACATCATCAACAACAATAAGAACTTTTTTCTGACCAAGGCTTTCTA
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:30874850-30874871
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30874850TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTCTTA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:30167822-30167843
TCTTCAAGTAAAGCTTCAATTTGTTCTGAT30167822TTGTCCACATCATCAACAACAATAAGAACTTTTCTCCGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:30202575-30202596
TCTCCAAGTAAAACTTCAATTTGTTCTAAT30202575TTGTCCACATCATCAACAACAATAAGAACTTTTTTCTGCCCAAGGCTTTCGA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:30234006-30234027
TCTCCAAGTAGAGCTTCAATTTGTTCTAAT30234006TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:30267114-30267135
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30267114TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTCTTA
Malus domestica genome assembly, chromosome: 7.
OU744548.1:31365052-31365073
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT31365052TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744548.1:31377757-31377778
TTTCCAACTAAAGCTTCAATTTGTTCTAAT31377757TTGTCCACATCATCAACAACAACAATAACTTTTCTCTTACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744548.1:31426783-31426804
TCTCCAAGTAAAGCATCAATTTGTTCTGAT31426783TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744548.1:31489223-31489244
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT31489223TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTCTTA
Malus domestica genome assembly, chromosome: 7.
OU744959.1:30525884-30525905
TCTCCAAGTAGAGCTTCAATTTGTTCTAAT30525884TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGGCCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744959.1:30535698-30535719
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30535698TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744959.1:30717034-30717055
TCTCCAAGTAAAGCATCAATTTGTTCTGAT30717034TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:30602350-30602371
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30602350TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:30615056-30615077
TTTCCAACTAAAGCTTCAATTTGTTCTAAT30615056TTGTCCACATCATCAACAACAACAATAACTTTTCTCTTACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:30664082-30664103
TCTCCAAGTAAAGCATCAATTTGTTCTGAT30664082TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:30726520-30726541
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT30726520TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTCTTA
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:3827305-3827326
TTTCCGAGTAAGGCTTCAATTTGAGCTAAT3827305TTGTCCACATCATCAACAACAAGAAGAACTTTTCTCTGACCTAGGCTTTTCA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:3842115-3842136
TTTCCTAGTAAAGCTTCAATTTGGTCTAAT3842115TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTTGCCTAGGCTCTTTA
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:33397424-33397445
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT33397424TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGCCTTTTTA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:4178736-4178757
TTTCCTAGTCAAGCATCAATTTGGTCTAAT4178736TTGTCCACATCATCAACAACAATAAGAACTTTCCTCTGACCTAGGCTCTTTA
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:25633331-25633352
TCTCCAAGTAAAGCTTCAATTTGTTCTAAT25633331TTGTCCACATCATCAACAACAATAAGAACTTTTCTCTGACCAAGGCTTTTTA
Conops quadrifasciatus genome assembly, chromosome: 2.
OX457078.1:6656439-6656460
ACAACATTGCCATCATTAACAACAACAACC6656439TTGTCCACATCATCAACAACAACACCCACGGTGACTGTACACAGCCATAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTTGTTGATGATGTGGACAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTTGTTGATGATGTGGACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.386 | 0.377 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTTGTTGATGATGTGGACAA&k=0&no_gap=0&offset=0&limit=50
0.506 | 0.120 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTCCACATCATCAACAACAA&k=0&no_gap=0&offset=0&limit=28
0.531 | 0.025 | cgi_end;

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