GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:12:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Geotrypetes seraphini genome assembly, chromosome: 7.
LR699152.1:43077468-43077487
GACCATGTTTCTTGTTTGATCTCTGCTGCA43077468TTGTTTCGTGTTCTTGCTGCAGTGTTTTGGTGTCCTGCTTGATATATTTT
HDE132K18.R HDE Setaria viridis genomic 3', genomic survey sequence.
KS284203.1:58-77
ATATGCAAGTTTTCAATTTGATCTATGTCC58TTGTTTCGTGTTCTTGCTGCAATGGTAGTGTAACGACATACTCCTACCGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OU015702.1:455962704-455962723
AGATTTTTGCTTTCTTGGTTCTGCCGCATC455962704TTGTTTCGTGTTCTTGCTGCTCACATCACAAGAAGGAGGAGGAGCTCTAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460090.1:446387792-446387811
AGATTTTTGCTTTCTTGGTTCTGCCGCATC446387792TTGTTTCGTGTTCTTGCTGCTCACATCACAAGAAGGAGGAGGAGCTCTAG
Porpolomopsis calyptriformis genome assembly, chromosome: 5.
OX621167.1:1400982-1401001
CCCAGCGAGTTTTAGACATCGACCCGTGAC1400982TTGTTTCGTGTTCTTGCTGCGAATGTCCTACCCAACGGTGAGGCTGAGAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638764.1:441652363-441652382
AGATTTTTGCTTTCTTGGTTCTGCCGCATC441652363TTGTTTCGTGTTCTTGCTGCTCACATCACAAGAAGGAGGAGGAGCTCTAG
Dryobotodes eremita genome assembly, chromosome: 4.
OU823245.1:12695922-12695941
TTCATATTGTGTCGCTTTGCTGGCTTCTAC12695922TTGTTTCGTGTTCTTGCTGCTGTGGACTGACTTTTCCAGGATATTTTGAG
Porphyra yezoensis cDNA, clone:PFL092e04_r, 5'end.
AU196638.1:311-330
GCAGCTACAGGAGGCGCAGCTGCAGCAGCT311GCAGCAAGAACACGAAACAAGGCGGCAATTGCAGCGGCAAGAGGAGCAGC
Swietenia macrophylla isolate HCNGB_00002344 chromosome 4.
CP135581.1:4969854-4969873
CAAATGACATATGAGACAGAGAAAGAAAGA4969854GCAGCAAGAACACGAAACAAAGATGAGGGTGCTAGTAATTGAATCGAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTTTCGTGTTCTTGCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTTTCGTGTTCTTGCTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.369 | 0.361 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTTTCGTGTTCTTGCTGC&k=0&no_gap=0&offset=0&limit=50
0.448 | 0.079 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGCAAGAACACGAAACAA&k=0&no_gap=0&offset=0&limit=43
0.450 | 0.001 | cgi_end;

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