GGGenome | Results

Help | Japanese

2025-04-09 08:53:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Acomys dimidiatus genome assembly, chromosome: 7.
OU015380.1:73472338-73472357

TTCCTGCTTACTGGAGTCTTCCCTGTGGGT73472338TTTACGCTGAGGATCTGCCTGTTGTGAGTGCTCAGGCCCCAAGGAGGGGG

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_8387.
FX703417.1:2113-2132

GGAAAAGAACTCCATCTCTAGATTGTTCTT2113TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCTGAA

KBrH099P11R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH099P11, genomic survey sequence.
DU125087.1:706-725

ACAAGGGAAAGGAAGTAAAGTCTTCACCTT706TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA

KBrH098P11R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH098P11, genomic survey sequence.
DU126467.1:607-626

ACAAGGGAAAGGAAGTAAAGTCTTCACCTT607TTTACGCTGAGGATCTGCCTG

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB014C24, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189234.2:2143-2162

ACAAGGGAAAGGAAGTAAAGTCTTCACCTT2143TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCTGAA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB064L06, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC234722.1:25520-25539

ACAAGGGAAAGGAAGTAAAGTCTTCACCTT25520TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCTGAA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012N11, complete sequence.
AC189588.2:108647-108666

ACAAGGGAAAGGAAGTAAAGTCTTCACCTT108647TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA

Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:1744081-1744100

ACAAGGGAAAGGAAGTAAAGTCTTCACCTT1744081TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA

Brassica napus genome assembly, chromosome: A05.
HG994359.1:1794822-1794841

ACAAGGGAAAGGAAGTAAAGTCTTCACCTT1794822TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA

BR003191 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-017E12 5', mRNA sequence.
EX018547.1:363-382

TTCAGATCAAATCTGATACGATCATGATGC363AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCC

BR050160 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-18B05 5', mRNA sequence.
EX065516.1:264-283

TTCAGATCAAATCTGATACGATCATGATGC264AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCC

BR115107 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-102C05 5', mRNA sequence.
EX131277.1:84-103

TTCAGATCAAATCTGATACGATCATGATGC84AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCC

BNAPO2GH_T3_023_G09_20JUN2007_067 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454968.1:353-372

TTTCGATCAAATCTGATACGATCATGATGC353AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCA

BNAPO4GH_T3_006_H01_20JULY2007_001 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR459136.1:341-360

TTTCGATCAAATCTGATACGATCATGATGC341AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.146 | 0.137 | search_plus_done; http://172.18.8.135:50400/match?q=TTTACGCTGAGGATCTGCCT&k=0&no_gap=0&offset=0&limit=50
0.596 | 0.450 | search_minus_done; http://172.18.8.135:50400/match?q=AGGCAGATCCTCAGCGTAAA&k=0&no_gap=0&offset=0&limit=41
0.599 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).