GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:34:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB028P15F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028P15, genomic survey sequence.
DX031988.1:643-662
TACGAAAGCTCAGGATCCTCAGAGTACGAA643TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
KBrB117O19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB117O19, genomic survey sequence.
ED528000.1:665-684
TACGAAAGCTCAGGATCCTCAGAGTACGAA665TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:13349099-13349118
TACGAAAGCTCAGGATCCTCAGAGTACGAA13349099TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019A15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC189249.1:128658-128677
ATGAGATCAGTGAAGTCATCAAACTTTGAG128658GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB074G23, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189460.2:1584-1603
ATGAGATCAGTGAAGTCATCAAACTTTGAG1584GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:13095401-13095420
ATGAGATCAGTGAAGTCATCAAACTTTGAG13095401GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTATAGGCTTGGAAGCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTATAGGCTTGGAAGCAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.149 | 0.140 | search_plus_done; http://172.18.8.135:50400/match?q=TTTATAGGCTTGGAAGCAAC&k=0&no_gap=0&offset=0&limit=50
0.181 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGCTTCCAAGCCTATAAA&k=0&no_gap=0&offset=0&limit=47
0.183 | 0.002 | cgi_end;

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