GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:44:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Micromys minutus genome assembly, chromosome: 19.
OZ004799.1:48334537-48334556
ACTTTAGTTAGTGAAATTTATAAATAAGGT48334537TTTATTTAGTTTCATACCCTCTACTGGACGTGTTAGACCAGCTGTTTTAT
KBrB028G12F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028G12, genomic survey sequence.
DX031551.1:452-471
TGTAAACCTAAAAAATGTAGTTTCATTTTT452TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG
KBrB030P19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB030P19, genomic survey sequence.
DX033517.1:449-468
TGTAAACCTAAAAAATGTAGTTTCATTTTT449TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG
KBrB067H16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB067H16, genomic survey sequence.
DX061055.1:461-480
TGTAAACCTAAAAAATGTAGTTTCATTTTT461TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG
KBrB084M06R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB084M06, genomic survey sequence.
DX074172.1:461-480
TGTGAACCTAAAAAATGTAGTTTCATTTTT461TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG
2_Tcm_b3v08.
OE184875.1:23412-23431
AAGAGAATATAGCATTAAATGTTGTTCGGT23412TTTATTTAGTTTCATACCCTTAATTCCTAATTTGCTCCCAAGGAATAGAG
5_Tge_b3v08.
OE842329.1:81977-81996
ACACAAGAGATTTACTATTCCCTGTAGTTT81977TTTATTTAGTTTCATACCCTGAATTTGAAAGACCCTCTTAATTCTAAAAC
Apamea sordens genome assembly, chromosome: 25.
OX244010.1:8846193-8846212
GTGGTTCAATTTGATCACACGTGAAACAAT8846193TTTATTTAGTTTCATACCCTAAGGAACGAGCCAGCCCTCTGGTCACGTGA
Pyrausta despicata genome assembly, chromosome: 18.
OY992862.1:15022618-15022637
TCAGCAAAACACGTTAAGTGTTGTAATGAT15022618TTTATTTAGTTTCATACCCTTTCAATGGCGAATTAGTTATCGTTTGAAAT
Limanda limanda genome assembly, chromosome: 5.
OY754996.1:11206298-11206317
ACTCTAGGTGAATGTCACCTATATGGGTAC11206298AGGGTATGAAACTAAATAAATCAGCCTTTGCGTCTGTGCACTCATCCCTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:140171-140190
CACTAACAATAAATTTATATATATACTGCG140171AGGGTATGAAACTAAATAAAAAAAATGAAACTACATTTTTTAGGTTTACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:140803-140822
CACTAACAATAAATTTATATATATACTGCG140803AGGGTATGAAACTAAATAAAAAAAATGAAACTACATTTTTTAGGTTTACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:141399-141418
CACTAACAATAAATTTATATATATACTGCG141399AGGGTATGAAACTAAATAAAAAAAATGAAACTACATTTTTTAGGTTTACA
Parietaria judaica genome assembly, chromosome: 5.
OX940864.1:405964-405983
CATGCTAAGAAACAAAAACACTGTTCACCG405964AGGGTATGAAACTAAATAAAACCCAAATAAGGCTATTCTTGCAAAAAGCC
Parietaria judaica genome assembly, chromosome: 13.
OX940872.1:9543426-9543445
CAGCTAAGAAAGAAAAACATTGTTCACCCG9543426AGGGTATGAAACTAAATAAAAATCCAAATAAGGCTATTCTTGCAAAACGC
Apamea anceps genome assembly, chromosome: 24.
OX637524.1:7154156-7154175
TCACGTGACCAGAGGGCTGGCTCGTTCCTT7154156AGGGTATGAAACTAAATAAAATTGTTTCACATGTGATCAAAAAAATCCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTATTTAGTTTCATACCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTATTTAGTTTCATACCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.222 | 0.213 | search_plus_done; http://172.18.8.135:50400/match?q=TTTATTTAGTTTCATACCCT&k=0&no_gap=0&offset=0&limit=50
0.256 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGTATGAAACTAAATAAA&k=0&no_gap=0&offset=0&limit=41
0.261 | 0.005 | cgi_end;

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