GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:28:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS1AD26JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW719699.1:493-514
GTTACCTCAATCTGGTTCCTGTGATCTCCC493TTTATTTCCACAGCCGACACACCTTTAAACTTAACCGCAGTTTTCATTGCTT
RS2BD62JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730543.1:556-577
GTTACCTCAATCTGGTTCCTGTGATCTCCC556TTTATTTCCACAGCCGACACACCTTTAAACTTAACCGCAGTTTTCATTGCTT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:2985864-2985885
GTTACCTCGATCTGGTTCCTGTGATCTCCC2985864TTTATTTCCACAGCCGACACACCTATAAGACATTACATTTAACTCTTTTAGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:1763798-1763819
GTTACCTCAATCTGGTTCCTGTGATCTCCC1763798TTTATTTCCACAGCCGACACACCTATAAAACCATTGCATTAACTATTTAGAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:1763798-1763819
GTTACCTCAATCTGGTTCCTGTGATCTCCC1763798TTTATTTCCACAGCCGACACACCTATAAAACCATTGCATTAACTATTTAGAT
RS1AD26TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715054.1:193-214
AAGCAATGAAAACTGCGGTTAAGTTTAAAG193GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATTGAGGTAAC
RS2BD62TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW726371.1:119-140
AAGCAATGAAAACTGCGGTTAAGTTTAAAG119GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATTGAGGTAAC
Brassica napus GSS, clone JBnB045D17, end read, primer SACR2(reverse).
FP020184.1:421-442
TCTAAAAGAGTTAAATGTAATGTCTTATAG421GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:44080214-44080235
ATCTAAAGAGTTAAATGTAATGTCTTATAG44080214GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC
Brassica napus genome assembly, chromosome: A01.
HG994355.1:29593393-29593414
TCTAAAAGAGTTAAATGTAATGTCTTATAG29593393GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:48891019-48891040
TCTAAAAGAGTTAAATGTAATGTCTTATAG48891019GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTATTTCCACAGCCGACACAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTATTTCCACAGCCGACACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.393 | 0.384 | search_plus_done; http://172.18.8.135:50400/match?q=TTTATTTCCACAGCCGACACAC&k=0&no_gap=0&offset=0&limit=50
0.640 | 0.247 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTGTCGGCTGTGGAAATAAA&k=0&no_gap=0&offset=0&limit=45
0.644 | 0.004 | cgi_end;

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