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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:06:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica rapa subsp. pekinensis clone KBrH045L01, complete sequence.
FP090263.1:76679-76698
CGCTCACTTGCCTGCACTAGCGCTGCATAA76679TTTCCAGACCCACATGTGAGTGAAACCGATTCTAGAGTTTTTGTAATCAG
Brassica napus genome assembly, chromosome: A07.
HG994361.1:349339-349358
CGCTCACTTGCCTGCACTAGCGCTGCATAA349339TTTCCAGACCCACATGTGAGTGAAACCGATTCTAGAGTTTCTGAAGGGTT
Brassica rapa genome, scaffold: A07.
LR031574.1:395503-395522
CGCTCACTTGCCTGCACTAGCGCTGCATAA395503TTTCCAGACCCACATGTGAGTGAAACCGATTCTAGAGTTTCTGAAGGGTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:397407-397426
CGCTCACTTGCCTGCACTAGCGCTGCATAA397407TTTCCAGACCCACATGTGAGTGAAACCGATTCTAGAGTTTCTGAAGGGTT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737395.1:460744871-460744890
AAGTTAGTAGTAAACATGTACATAGTATGG460744871TTTCCAGACCCACATGTGAGATAACCTCCATTACCATATAACATTTTGAT
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737494.1:3537033-3537052
TAAGTTGTAGTAAACATGTACATAGTATGG3537033TTTCCAGACCCACATGTGAGATAACCTCCATTACCATATAACATTTTGAT
Rhinatrema bivittatum genome assembly, chromosome: 6.
LR584392.1:60025440-60025459
ATTATAACATGACATACATATGTAATTTTA60025440CTCACATGTGGGTCTGGAAATTTTTTAAAGGCCATTTCTGCACATAAAAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence.
AC189534.2:2116-2135
CTGATTACAAAAACTCTAGAATCGGTTTCA2116CTCACATGTGGGTCTGGAAATTATGCAGCGCTAGTGCAGGCAAGTGAGCG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:36013314-36013333
AACCCTTCAGAAACTCTAGAATCGGTTTCA36013314CTCACATGTGGGTCTGGAAATTATGCAGCGCTAGTGCAGGCAAGTGAGCG
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737387.1:488244480-488244499
ATCAAAATGTTATATGGTAATGGAGGTTCT488244480CTCACATGTGGGTCTGGAAACCATACTATGTACATGTTTACTACTAACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTCCAGACCCACATGTGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTCCAGACCCACATGTGAG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.226 | 0.217 | search_plus_done; http://172.18.8.135:50400/match?q=TTTCCAGACCCACATGTGAG&k=0&no_gap=0&offset=0&limit=50
0.323 | 0.097 | search_minus_done; http://172.18.8.135:50400/match?q=CTCACATGTGGGTCTGGAAA&k=0&no_gap=0&offset=0&limit=44
0.325 | 0.003 | cgi_end;

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