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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:06:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:5126978-5126997
GTTATATCCCAAGAAAATACATCTTTTACT5126978TTTCCCATCAAGTTTGGAGCACACATAAGGTTTTAACCATGGAAAGTACA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:28832704-28832723
TATACTTTCCATGGTTAAAACCTTATGTGT28832704GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:28639190-28639209
TGTACTTTCCATGGTTAAAACCTTATGTGT28639190GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:28408335-28408354
TGTACTTTCCATGGTTAAAACCTTATGTGT28408335GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC
Malus domestica genotype Florina amplicon M8s genomic sequence.
KM105074.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype McIntosh amplicon M8s genomic sequence.
KM105075.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype Braeburn amplicon M8s genomic sequence.
KM105076.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype Jonathan amplicon M8s genomic sequence.
KM105077.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype F2-26829-2-2 amplicon M8s genomic sequence.
KM105078.1:239-258
TRTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype Granny Smith amplicon M8s genomic sequence.
KM105079.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype Delicious amplicon M8s genomic sequence.
KM105080.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype Cox's Orange Pippin amplicon M8s genomic sequence.
KM105081.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus domestica genotype Golden Delicious amplicon M8s genomic sequence.
KM105082.1:239-258
TGTACTTTCCATGGTTAAAACCTTATGTGT239GCTCCAAACTTGATGGGAAA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25051181-25051200
TGTACTTTCCATGGTTAAAACCTTATGTGT25051181GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:25104928-25104947
TGTACTTTCCATGGTTAAAACCTTATGTGT25104928GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:28863258-28863277
TGTACTTTCCATGGTTAAAACCTTATGTGT28863258GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:28312554-28312573
TGTACTTTCCATGGTTAAAACCTTATGTGT28312554GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:25336814-25336833
TGTACTTTCCATGGTTAAAACCTTATGTGT25336814GCTCCAAACTTGATGGGAAAAGTAAAAGATGTATTTTCTTGGGATATAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTCCCATCAAGTTTGGAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTCCCATCAAGTTTGGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.321 | 0.312 | search_plus_done; http://172.18.8.135:50400/match?q=TTTCCCATCAAGTTTGGAGC&k=0&no_gap=0&offset=0&limit=50
0.468 | 0.147 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCCAAACTTGATGGGAAA&k=0&no_gap=0&offset=0&limit=49
0.480 | 0.011 | cgi_end;

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