GGGenome | Results

2025-04-12 19:59:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:39421803-39421822

TTCATTGGAGATATAAGAAGTGGATGCAAG39421803TTTCTCATGTGCAAGGTCCATCGAGTTTTATGCTGGTAAGTAGACTTTTG

Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:43983148-43983167

TTCATTGGAGATATAAGAAGTGGATGCAAG43983148TTTCTCATGTGCAAGGTCCATCGAGTTTTATGCTGGTAAGTAGACTTTTG

Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:5233827-5233846

CAAAAGTCTACTTACCAGCATAAAACTCGA5233827TGGACCTTGCACATGAGAAACTTGCATCCACTTCTTATATCTCCAATGAA

Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:5200133-5200152

CAAAAGTCTACTTACCAGCATAAAACTCGA5200133TGGACCTTGCACATGAGAAACTTGCATCCACTTCTTATATCTCCAATGAA

Eilema caniola genome assembly, chromosome: Z.
OX421460.1:39131926-39131945

AATAACATGTTTCAAGCTGACTGTGCCCTT39131926TGGACCTTGCACATGAGAAAATGCTTTTAAGGTTACAAATAAATACGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.119 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=TTTCTCATGTGCAAGGTCCA&k=0&no_gap=0&offset=0&limit=50
0.162 | 0.043 | search_minus_done; http://172.18.8.135:50400/match?q=TGGACCTTGCACATGAGAAA&k=0&no_gap=0&offset=0&limit=48
0.164 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).