GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:10:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:5680242-5680261
GAGGAGTTGGAGTTCAGTGACGACCTTGAC5680242TTTCTTTTGGCTCTCCCTGAGGAAGGTGAGGCATCCCCAGAGCATGACCC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:5475577-5475596
GAGGAGTTGGAGTTCAGTGACGACCTTGAC5475577TTTCTTTTGGCTCTCCCTGAGGAAGGTGAGGCAGCCCCAGAGCATGACCC
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:5700688-5700707
GAGGAGTTGGAGTTCAGTGACGACCTTGAC5700688TTTCTTTTGGCTCTCCCTGAGGAAGGTGAGGCAGCCCCAGAGCATGACCC
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:6565396-6565415
GAGGAGTTGGAGTTCAGTGACGACCTTGAC6565396TTTCTTTTGGCTCTCCCTGAGGAAGGTGAGGCAGCCCCAGAGCATGACCC
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:29979102-29979121
GGGTCATGCTCTGGGGCTGCCTCACCTTCC29979102TCAGGGAGAGCCAAAAGAAAGTCAAGGTCGTCACTGAACTCCAACTCCTC
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:30279322-30279341
GGGTCATGCTCTGGGGCTGCCTCACCTTCC30279322TCAGGGAGAGCCAAAAGAAAGTCAAGGTCGTCACTGAACTCCAACTCCTC
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:31011801-31011820
GGGTCATGCTCTGGGGCTGCCTCACCTTCC31011801TCAGGGAGAGCCAAAAGAAAGTCAAGGTCGTCACTGAACTCCAACTCCTC
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:32386341-32386360
GGGTCATTCTCTGGGGCTGCCTCACCTTCC32386341TCAGGGAGAGCCAAAAGAAAGTCAAGGTCGTCACTGAACTCCAACTCCTC
Malus domestica genome assembly, chromosome: 2.
OU696678.1:32519096-32519115
GGGTCATGCTCTGGGGCTGCCTCACCTTCC32519096TCAGGGAGAGCCAAAAGAAAGTCAAGGTCGTCACTGAACTCCAACTCCTC
Malus domestica genome assembly, chromosome: 2.
OU744543.1:32252862-32252881
GGGTCATTCTCTGGGGCTGCCTCACCTTCC32252862TCAGGGAGAGCCAAAAGAAAGTCAAGGTCGTCACTGAACTCCAACTCCTC
Malus domestica genome assembly, chromosome: 2.
OU744954.1:32035178-32035197
GGGTCATTCTCTGGGGCTGCCTCACCTTCC32035178TCAGGGAGAGCCAAAAGAAAGTCAAGGTCGTCACTGAACTCCAACTCCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTCTTTTGGCTCTCCCTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTCTTTTGGCTCTCCCTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=TTTCTTTTGGCTCTCCCTGA&k=0&no_gap=0&offset=0&limit=50
0.115 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGGGAGAGCCAAAAGAAA&k=0&no_gap=0&offset=0&limit=46
0.119 | 0.004 | cgi_end;

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