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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:12:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:10810824-10810845
ACCCTTTGAAAGGACAGATGATCTTTTTTT10810824TTTGAACAACAAAAAGGACAGATAATCTACAATGTTAGATTTAGCCATGAAC
Agriphila geniculea genome assembly, chromosome: 6.
OX038875.1:16732486-16732507
GAACTACAGCGTTAAATACGTTCTACAATT16732486TTTGAACAACAAAAAGGACAGAAAGACTAATAATATATGTTCCAGCTGCAAT
Agriphila geniculea genome assembly, chromosome: 9.
OX038878.1:12634236-12634257
GAACTACAGCGTTAAATACGTTCTACAACT12634236TTTGAACAACAAAAAGGACAGAAAGACTAATAATATATGTTCCAGCTGTAAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:21813715-21813736
GTTCATGGCTAAATCTAACATTGTAGATTA21813715TCTGTCCTTTTTGTTGTTCAAAAGAAAAGGGTTTATGTTGAACAAAAAAAAA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:21799933-21799954
GTTCATGGCTAAATCTAACATTGTAGATTA21799933TCTGTCCTTTTTGTTGTTCAAAAGAAAAGGGTTTATGTTGAACAAAAAAAAA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44980730-44980751
GTTCATGGCTAAATCTAACATTGTAGATTA44980730TCTGTCCTTTTTGTTGTTCAAAAAAAAAAGATCATCTGTCCTTTCAAAGGGT
Brassica rapa genome, scaffold: A03.
LR031572.1:21624693-21624714
GTTCATGGCTAAATCTAACATTGTAGATTA21624693TCTGTCCTTTTTGTTGTTCAAAAGAAAAGGGTTTATATATTACTCAGAAACA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47854606-47854627
GTTCATGGCTAAATCTAACATTGTAGATTA47854606TCTGTCCTTTTTGTTGTTCAAAAAAAAAAGATCATCTGTCCTTTCAAAGGGT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21752840-21752861
GTTCATGGCTAAATCTAACATTGTAGATTA21752840TCTGTCCTTTTTGTTGTTCAAAAGAAAAGGGTTTATATATTACTCAGAAACA
Agriphila geniculea genome assembly, chromosome: 8.
OX038877.1:21097822-21097843
ATTGCAGCTGGAACATATATTATTAGTCTT21097822TCTGTCCTTTTTGTTGTTCAAAAATTGTAGAACGTATTTAACGCTGTAGTTC
Agriphila geniculea genome assembly, chromosome: 15.
OX038884.1:3700360-3700381
ATTACAGCTGGAACATATATTATTAGTCTT3700360TCTGTCCTTTTTGTTGTTCAAAAGTTGTAGAACGTATTTAACGCTGTAGTTC
Agriphila geniculea genome assembly, chromosome: 17.
OX038886.1:7193242-7193263
ATTACAGCTGGAACATATATTATTAGTCTT7193242TCTGTCCTTTTTGTTGTTCAAAAGTTGAAGAACGTATTTAACGCTGTAGTTC
Agriphila geniculea genome assembly, chromosome: 19.
OX038888.1:5699720-5699741
ATTACAGCTGGAACATATATTATTAGTCTT5699720TCTGTCCTTTTTGTTGTTCAAAAGTTGTAGAACGTATTTAACGCTGTAGTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTGAACAACAAAAAGGACAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGAACAACAAAAAGGACAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.354 | 0.346 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGAACAACAAAAAGGACAGA&k=0&no_gap=0&offset=0&limit=50
0.487 | 0.132 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGTCCTTTTTGTTGTTCAAA&k=0&no_gap=0&offset=0&limit=47
0.493 | 0.006 | cgi_end;

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