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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 19:01:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfw2040E02_e17169.g1 Mdfw Malus domestica cDNA 5', mRNA sequence.
GO553674.1:309-328
ATCTAAGAAAGCGAGGGCGGAAGCAGCACC309TTTGAAGGACTGCGATCTCGATCTCGGTCTCTCTCGAATTGCTCGCGATC
Mdlv2_4022P07_e27176.b1 Mdlv2 Malus domestica cDNA 3', mRNA sequence.
GO562954.1:396-415
TGAGTTTTCGGCTGCCTAAAATCTTGTGCC396TTTGAAGGACTGCGATCTCGATCTCGGTCTCTCTCGAATTGCTCGCGATC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:1390991-1391010
AGCTAAGAAAGGGAGGGCGGAAGCAGCACC1390991TTTGAAGGACTGCGATCTCGATCTCCGTCTCGGTCTCTCTCGAATTGCTC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:2201547-2201566
AGCTAAGAAAGCGAGGGCGGAAGCAGCACC2201547TTTGAAGGACTGCGATCTCGATCTCGGTCTCTCTCGAATTGCTCGCGATC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:2205799-2205818
AGCTAAGAAAGCGAGGGCGGAAGCAGCACC2205799TTTGAAGGACTGCGATCTCGATCTTGGTCTCGGTCTCTCTCTCTATCCCG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:2260949-2260968
AGCTAAGAAAGCGAGGGCGGAAGCAGCACC2260949TTTGAAGGACTGCGATCTCGATCTCGATCTCGGTCTTGATCAGGATTGGC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:1554402-1554421
AGCTAAGAAAGCGAGGGCGGAAGCAGCACC1554402TTTGAAGGACTGCGATCTCGATCTCGATCTCGGTCTTGATCAGAATTGGC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:1582740-1582759
AGCTAAGAAAGCGAGGGCGGAAGCAGCACC1582740TTTGAAGGACTGCGATCTCGATCTCGATCTCGGTCTCTCTCTCTATCCCG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:1589045-1589064
AGCTAAGAAAGCGAGGGCGGAAGCAGCACC1589045TTTGAAGGACTGCGATCTCGATCTCGATCTCGGTCTTGATCAGAATTGGC
Eilema caniola genome assembly, chromosome: 11.
OX421472.1:17459859-17459878
TTTTGTGATCCATCAATATTTTCAATATAT17459859TTTGAAGGACTGCGATCTCGTCATTATCGTCACAGACTAGATAATAAAAT
Mdfw2040e02.y1 Mdfw Malus domestica cDNA clone Mdfw2040e02 5' similar to TR:Q9ZS31 Q9ZS31 NL27, mRNA sequence.
CN581701.1:328-347
GATCGCGAGCAATTCGAGAGAGACCGAGAT328CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:54737471-54737490
GCCAATCCTGATCAAGACCGAGATCGAGAT54737471CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:54786290-54786309
CGGGATAGAGAGAGAGACCGAGACCAAGAT54786290CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:54790541-54790560
GATCGCGAGCAATTCGAGAGAGACCGAGAT54790541CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:48011143-48011162
CGGGATAGAGAGAGAGACCGAGATCGAGAT48011143CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGGCCTCGCTTTCTTAGCT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:52536974-52536993
GCCAATCCTGATCAAGACCGAGATCGAGAT52536974CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:52583269-52583288
CGGGATAGAGAGAGAGACCGAGACCAAGAT52583269CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:52587497-52587516
GATCGCGAGCAATTCGAGAGAGACCGAGAT52587497CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:54231676-54231695
GCCAATCCTGATCAAGACCGAGATCGAGAT54231676CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:54278374-54278393
CGGGATAGAGAGAGAGACCGAGACCAAGAT54278374CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:54282602-54282621
GATCGCGAGCAATTCGAGAGAGACCGAGAT54282602CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:53966140-53966159
GCCAATCCTGATCAAGACCGAGATCGAGAT53966140CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:54012427-54012446
CGGGATAGAGAGAGAGACCGAGACCAAGAT54012427CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:54016655-54016674
GATCGCGAGCAATTCGAGAGAGACCGAGAT54016655CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:54552095-54552114
GCCAATCCTGATCAAGACCGAGATCGAGAT54552095CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:54598795-54598814
CGGGATAGAGAGAGAGACCGAGACCAAGAT54598795CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:54603023-54603042
GATCGCGAGCAATTCGAGAGAGACCGAGAT54603023CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:53579589-53579608
GCCAATCCTGATCAAGACCGAGATCGAGAT53579589CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:53625889-53625908
CGGGATAGAGAGAGAGACCGAGACCAAGAT53625889CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:53630117-53630136
GATCGCGAGCAATTCGAGAGAGACCGAGAT53630117CGAGATCGCAGTCCTTCAAAGGTGCTGCTTCCGCCCTCGCTTTCTTAGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTGAAGGACTGCGATCTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGAAGGACTGCGATCTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.534 | 0.526 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGAAGGACTGCGATCTCG&k=0&no_gap=0&offset=0&limit=50
0.665 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGATCGCAGTCCTTCAAA&k=0&no_gap=0&offset=0&limit=40
0.678 | 0.013 | cgi_end;

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