GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 18:27:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene16004_NK1 mRNA sequence.
JV439338.1:1498-1517
AAGAAAGGGCAAGATTGTTAACCCAATTAT1498TTTGACTAGTGCTCCAGCGAAACGAGAGCTGCAACCAACGAGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:18142180-18142199
TCCGGAGGCTCGTTGGTTGCAGCTCTCATT18142180TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCTTGCCCTTTCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:18340780-18340799
TCCGGAGGCTCGTTGGTTGCAGCTCTCATT18340780TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCTTGCCCTTTCTT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01.
HG996466.1:10303137-10303156
TCTGGAGGCTCGTTGGTTGCAGCTCTCATT10303137TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCGTGCCCTTTCTT
Musa schizocarpa genome assembly, chromosome: S01.
LS990915.1:11142884-11142903
TCTGGAGGCTCGTTGGTTGCAGCTCTCATT11142884TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCTTGCCCTTTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTGACTAGTGCTCCAGCGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGACTAGTGCTCCAGCGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGACTAGTGCTCCAGCGA&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=TCGCTGGAGCACTAGTCAAA&k=0&no_gap=0&offset=0&limit=49
0.148 | 0.003 | cgi_end;

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